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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029765 through 18771 annotations produced 1 hits


Annotation Number : CG16756
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029765
Gbrowse : chrX:5321549-5322248 (+) // 100.0 //
Probeset : 1626783_at
Accessions : protein= NP_572222;, nucleotide= NM_131994;
Interpro : "0003796 // lysozyme activity // non-traceable author statement /// 0003796 // lysozyme activity // inferred from electr
FlyMine data for FBgn0029765.
BDGP gene expression has embryonic in situ data for CG16756: 8 pix of staining in 1 body parts.
Homophila reports that CG16756 is a close match (2e-15) to human gene LYZ (NP_000230), a gene associated with Amyloidosis, renal, 105200 (3).
BioGrid reports that CG16756 interacts with CG5325 .
VDRC has 3 RNAi stocks for FBgn0029765 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 11 of 4 0.10Down
Head721 454 of 4 4.20Up
Eye342 414 of 4 1.99Up
Thoracicoabdominal ganglion20 10 of 4 0.10Down
Salivary gland12 40 of 4 0.07Down
Crop20 30 of 4 0.10Down
Midgut8 20 of 4 0.00Down
Tubule19 22 of 4 0.10Down
Hindgut74 34 of 4 0.40Down
Heart1215 404 of 4 7.08Up
Fat body1730 994 of 410.08Up
Ovary2 00 of 4 0.00Down
Testis0 00 of 4 0.00Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca1167 724 of 4 6.80Up
Mated spermatheca791 1124 of 4 4.61Up
Adult carcass979 554 of 4 5.70Up
Larval CNS2 10 of 4 0.01Down
Larval Salivary gland1 00 of 4 0.01Down
Larval midgut8 10 of 4 0.05Down
Larval tubule4 10 of 4 0.00Down
Larval hindgut6 20 of 4 0.04Down
Larval fat body31 12 of 4 0.20Down
Larval trachea4 40 of 4 0.03Down
Larval carcass1 00 of 4 0.01Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly171 134 of 4

Looking for FBgn0029765. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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