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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029766 through 18771 annotations produced 1 hits



(CG15784):

Annotation Number : CG15784
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029766
Gbrowse : chrX:5324712-5326494 (+) // 100.0 //
Probeset : 1640884_at
Accessions : protein= NP_572223;, nucleotide= NM_131995;
FlyMine data for FBgn0029766.
TRiP has 1 RNAi stocks for FBgn0029766 available for purchase.
VDRC has 3 RNAi stocks for FBgn0029766 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 ± 164 of 4 0.10Down
Head273 ± 214 of 4 0.60Down
Eye82 ± 84 of 4 0.19Down
Thoracicoabdominal ganglion40 ± 14 of 4 0.10Down
Salivary gland126 ± 94 of 4 0.28Down
Crop222 ± 64 of 4 0.50Down
Midgut3114 ± 424 of 4 7.00Up
Tubule1163 ± 704 of 4 2.60Up
Hindgut1090 ± 434 of 4 2.40Up
Heart353 ± 274 of 4 0.79None
Fat body218 ± 504 of 4 0.49Down
Ovary28 ± 14 of 4 0.10Down
Testis69 ± 24 of 4 0.20Down
Male accessory glands268 ± 994 of 4 0.60None
Virgin spermatheca458 ± 1484 of 4 1.03None
Mated spermatheca251 ± 214 of 4 0.56Down
Adult carcass444 ± 464 of 4 1.00None
Larval CNS94 ± 184 of 4 0.21Down
Larval Salivary gland611 ± 974 of 4 1.37None
Larval midgut1857 ± 1314 of 4 4.17Up
Larval tubule2165 ± 1114 of 4 4.90Up
Larval hindgut1173 ± 1684 of 4 2.63Up
Larval fat body318 ± 484 of 4 0.70None
Larval trachea1180 ± 1134 of 4 2.65Up
Larval carcass783 ± 924 of 4 1.76Up
S2 cells (growing)770 ± 54 of 4 1.73Up
Whole fly445 ± 474 of 4

Looking for FBgn0029766. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime