Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029770 through 18771 annotations produced 1 hits



(CG4151):

Annotation Number : CG4151
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029770
Gbrowse : chrX:5395864-5396608 (+) // 100.0 //
Probeset : 1625660_at
Accessions : protein= NP_572227; /// NP_995716;, nucleotide= NM_131999; /// NM_205994;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029770.
BDGP gene expression has embryonic in situ data for CG4151: 8 pix of staining in 1 body parts.
BioGrid reports that CG4151 interacts with CG8942 .
VDRC has 5 RNAi stocks for FBgn0029770 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 10 of 4 2.60None
Head4 ± 10 of 4 1.60None
Eye6 ± 00 of 4 2.16Up
Thoracicoabdominal ganglion2 ± 00 of 4 1.00None
Salivary gland5 ± 00 of 4 1.75None
Crop10 ± 20 of 4 3.70Up
Midgut5 ± 10 of 4 1.80None
Tubule6 ± 10 of 4 2.30Up
Hindgut6 ± 10 of 4 2.40Up
Heart6 ± 20 of 4 2.15None
Fat body8 ± 70 of 4 2.98None
Ovary6 ± 20 of 4 2.20None
Testis5 ± 10 of 4 1.90None
Male accessory glands7 ± 20 of 4 2.50None
Virgin spermatheca7 ± 10 of 4 2.60None
Mated spermatheca13 ± 20 of 4 4.75Up
Adult carcass8 ± 20 of 4 2.90None
Larval CNS8 ± 10 of 4 3.07Up
Larval Salivary gland15 ± 20 of 4 5.55Up
Larval midgut8 ± 30 of 4 2.88None
Larval tubule12 ± 10 of 4 4.50Up
Larval hindgut7 ± 10 of 4 2.49None
Larval fat body79 ± 661 of 427.80None
Larval trachea8 ± 50 of 4 2.87None
Larval carcass15 ± 30 of 4 5.27Up
S2 cells (growing)12 ± 10 of 4 4.25Up
Whole fly2 ± 00 of 4

Looking for FBgn0029770. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime