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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029771 through 18771 annotations produced 1 hits



(CG12730):

Annotation Number : CG12730
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029771
Gbrowse : chrX:5411293-5412803 (+) // 100.0 //
Probeset : 1631315_at
Accessions : protein= NP_572228;, nucleotide= NM_132000;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0029771.
BioGrid reports that CG12730 interacts with CG5408 .
VDRC has 1 RNAi stocks for FBgn0029771 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain557 134 of 4 5.30Up
Head361 164 of 4 3.40Up
Eye186 144 of 4 1.77Up
Thoracicoabdominal ganglion666 184 of 4 6.30Up
Salivary gland342 244 of 4 3.24Up
Crop288 164 of 4 2.70Up
Midgut308 134 of 4 2.90Up
Tubule416 134 of 4 3.90Up
Hindgut360 44 of 4 3.40Up
Heart330 224 of 4 3.13Up
Fat body140 164 of 4 1.33Up
Ovary18 04 of 4 0.20Down
Testis56 14 of 4 0.50Down
Male accessory glands213 64 of 4 2.00Up
Virgin spermatheca184 124 of 4 1.74Up
Mated spermatheca229 84 of 4 2.17Up
Adult carcass236 144 of 4 2.20Up
Larval CNS148 104 of 4 1.40Up
Larval Salivary gland279 34 of 4 2.64Up
Larval midgut295 144 of 4 2.79Up
Larval tubule135 34 of 4 1.30Up
Larval hindgut235 114 of 4 2.23Up
Larval fat body25 44 of 4 0.20Down
Larval trachea142 184 of 4 1.35Up
Larval carcass154 74 of 4 1.46Up
S2 cells (growing)678 164 of 4 6.42Up
Whole fly105 74 of 4

Looking for FBgn0029771. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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