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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029778 through 18771 annotations produced 1 hits



RhoGAP5A (RhoGAP5A):

Annotation Number : CG3208
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029778
Gbrowse : chrX:5510602-5512834 (-) // 100.0 //
Probeset : 1623645_a_at
Accessions : protein= NP_572235; /// NP_727007;, nucleotide= NM_132007; /// NM_167040;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0019992 // diacylglycerol binding // inferred from
FlyMine data for FBgn0029778.
Homophila reports that CG3208 is a close match (9e-11) to human gene DLC1 (NP_872584), a gene associated with Colorectal cancer, somatic (3).
TRiP has 2 RNAi stocks for FBgn0029778 available for purchase.
VDRC has 3 RNAi stocks for FBgn0029778 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 04 of 4 1.30Up
Head57 24 of 4 1.00None
Eye93 134 of 4 1.69None
Thoracicoabdominal ganglion70 44 of 4 1.30Up
Salivary gland63 54 of 4 1.15None
Crop63 14 of 4 1.10Up
Midgut43 23 of 4 0.80Down
Tubule25 13 of 4 0.50Down
Hindgut41 44 of 4 0.70None
Heart78 34 of 4 1.41Up
Fat body47 94 of 4 0.86None
Ovary75 24 of 4 1.40Up
Testis33 14 of 4 0.60Down
Male accessory glands59 20 of 4 1.10None
Virgin spermatheca49 24 of 4 0.89None
Mated spermatheca47 24 of 4 0.85None
Adult carcass48 14 of 4 0.90Down
Larval CNS97 54 of 4 1.75Up
Larval Salivary gland36 60 of 4 0.66Down
Larval midgut48 33 of 4 0.87None
Larval tubule33 24 of 4 0.60Down
Larval hindgut29 14 of 4 0.52Down
Larval fat body48 34 of 4 0.90None
Larval trachea95 34 of 4 1.71Up
Larval carcass42 24 of 4 0.77Down
S2 cells (growing)87 24 of 4 1.57Up
Whole fly55 24 of 4

Looking for FBgn0029778. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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