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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029783 through 18771 annotations produced 1 hits



Sirt4 (Sirt4):

Annotation Number : CG3187
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029783
Gbrowse : chrX:5558660-5560002 (-) // 100.0 //
Probeset : 1623881_s_at
Accessions : protein= NP_572241; /// NP_727013; /// NP_727014;, nucleotide= NM_132013; /// NM_167041; /// NM_167042;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : "0008270 // zinc ion binding // inferred from electronic annotation /// 0016811 // hydrolase activity
FlyMine data for FBgn0029783.
BDGP gene expression has embryonic in situ data for CG3187: 21 pix of staining in 7 body parts.
BioGrid reports that CG3187 interacts with CG32356 CG3533 CG3664 CG3731 CG3906 Dmel CG34168 CG7017 CG7361 CG7437 CG8942 CG9036 CG6521 CG15112 CG4184 .
TRiP has 3 RNAi stocks for FBgn0029783 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029783 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain77 34 of 4 1.20None
Head82 44 of 4 1.30Up
Eye120 84 of 4 1.83Up
Thoracicoabdominal ganglion86 34 of 4 1.30Up
Salivary gland99 74 of 4 1.52Up
Crop94 04 of 4 1.40Up
Midgut68 44 of 4 1.00None
Tubule97 54 of 4 1.50Up
Hindgut96 34 of 4 1.50Up
Heart145 64 of 4 2.22Up
Fat body132 194 of 4 2.01Up
Ovary54 24 of 4 0.80None
Testis48 14 of 4 0.70Down
Male accessory glands26 14 of 4 0.40Down
Virgin spermatheca109 64 of 4 1.67Up
Mated spermatheca77 44 of 4 1.18None
Adult carcass136 84 of 4 2.10Up
Larval CNS55 64 of 4 0.84None
Larval Salivary gland91 114 of 4 1.38None
Larval midgut118 44 of 4 1.81Up
Larval tubule94 54 of 4 1.40Up
Larval hindgut132 34 of 4 2.02Up
Larval fat body72 64 of 4 1.10None
Larval trachea108 154 of 4 1.65Up
Larval carcass180 164 of 4 2.75Up
S2 cells (growing)64 14 of 4 0.98None
Whole fly65 54 of 4

Looking for FBgn0029783. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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