FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0029785 through 18771 annotations produced 3 hits

Ribosomal protein L35 (RpL35):

Annotation Number : CG4111
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029785
Gbrowse : chrX:5566474-5567589 (+) // 100.0 //
Probeset : 1635917_at
Accessions : protein= NP_572243; /// NP_727016;, nucleotide= NM_132015; /// NM_167043;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0029785.
BDGP gene expression has embryonic in situ data for CG4111: 4 pix of staining in 2 body parts.
BioGrid reports that CG4111 interacts with CG7202 CG7763 .
VDRC has 3 RNAi stocks for FBgn0029785 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	81 ± 1	4 of 4	1.00	None
Head	97 ± 8	4 of 4	1.10	None
Eye	60 ± 3	4 of 4	0.70	None
Thoracicoabdominal ganglion	90 ± 6	4 of 4	1.10	None
Salivary gland	105 ± 7	4 of 4	1.22	None
Crop	120 ± 7	4 of 4	1.40	Up
Midgut	146 ± 6	4 of 4	1.70	Up
Tubule	7 ± 1	1 of 4	0.10	Down
Hindgut	94 ± 1	4 of 4	1.10	None
Heart	70 ± 5	4 of 4	0.82	None
Fat body	210 ± 42	4 of 4	2.45	Up
Ovary	108 ± 4	4 of 4	1.30	None
Testis	21 ± 0	4 of 4	0.30	Down
Male accessory glands	140 ± 5	4 of 4	1.60	Up
Virgin spermatheca	9 ± 1	4 of 4	0.11	Down
Mated spermatheca	11 ± 1	3 of 4	0.13	Down
Adult carcass	96 ± 8	4 of 4	1.10	None
Larval CNS	239 ± 27	4 of 4	2.79	Up
Larval Salivary gland	309 ± 11	4 of 4	3.60	Up
Larval midgut	105 ± 7	4 of 4	1.23	None
Larval tubule	101 ± 7	4 of 4	1.20	None
Larval hindgut	137 ± 4	4 of 4	1.60	Up
Larval fat body	150 ± 15	4 of 4	1.80	Up
Larval trachea	77 ± 9	4 of 4	0.90	None
Larval carcass	182 ± 24	4 of 4	2.13	Up
S2 cells (growing)	231 ± 10	4 of 4	2.69	Up
Whole fly	85 ± 8	4 of 4

Ribosomal protein L35 (RpL35):

Annotation Number : CG4111
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029785
Gbrowse : chrX:5566690-5567589 (+) // 100.0 //
Probeset : 1627206_at
Accessions : protein= NP_572243; /// NP_727016;, nucleotide= NM_132015; /// NM_167043;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0029785.
BDGP gene expression has embryonic in situ data for CG4111: 4 pix of staining in 2 body parts.
BioGrid reports that CG4111 interacts with CG7202 CG7763 .
VDRC has 3 RNAi stocks for FBgn0029785 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	712 ± 38	4 of 4	0.70	Down
Head	1289 ± 76	4 of 4	1.20	None
Eye	1054 ± 31	4 of 4	0.97	None
Thoracicoabdominal ganglion	938 ± 27	4 of 4	0.90	Down
Salivary gland	3579 ± 60	4 of 4	3.28	Up
Crop	1758 ± 32	4 of 4	1.60	Up
Midgut	1677 ± 30	4 of 4	1.50	Up
Tubule	348 ± 25	4 of 4	0.30	Down
Hindgut	1696 ± 5	4 of 4	1.60	Up
Heart	1507 ± 89	4 of 4	1.38	Up
Fat body	2887 ± 267	4 of 4	2.64	Up
Ovary	1043 ± 19	4 of 4	1.00	None
Testis	200 ± 6	4 of 4	0.20	Down
Male accessory glands	2810 ± 38	4 of 4	2.60	Up
Virgin spermatheca	421 ± 18	4 of 4	0.39	Down
Mated spermatheca	374 ± 32	4 of 4	0.34	Down
Adult carcass	1596 ± 89	4 of 4	1.50	Up
Larval CNS	1045 ± 38	4 of 4	0.96	None
Larval Salivary gland	2433 ± 148	4 of 4	2.23	Up
Larval midgut	1394 ± 24	4 of 4	1.28	Up
Larval tubule	1634 ± 45	4 of 4	1.50	Up
Larval hindgut	1580 ± 42	4 of 4	1.45	Up
Larval fat body	1968 ± 255	4 of 4	1.80	Up
Larval trachea	1316 ± 129	4 of 4	1.21	Up
Larval carcass	1635 ± 62	4 of 4	1.50	Up
S2 cells (growing)	2379 ± 42	4 of 4	2.18	Up
Whole fly	1092 ± 47	4 of 4

Ribosomal protein L35 (RpL35):

Annotation Number : CG4111
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029785
Gbrowse : chrX:5566474-5567589 (+) // 100.0 //
Probeset : 1626209_a_at
Accessions : protein= NP_572243; /// NP_727016;, nucleotide= NM_132015; /// NM_167043;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0029785.
BDGP gene expression has embryonic in situ data for CG4111: 4 pix of staining in 2 body parts.
BioGrid reports that CG4111 interacts with CG7202 CG7763 .
VDRC has 3 RNAi stocks for FBgn0029785 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3406 ± 47	4 of 4	0.80	None
Head	4959 ± 222	4 of 4	1.20	None
Eye	7346 ± 107	4 of 4	1.73	Up
Thoracicoabdominal ganglion	4917 ± 131	4 of 4	1.20	None
Salivary gland	12325 ± 265	4 of 4	2.91	Up
Crop	6300 ± 361	4 of 4	1.50	Up
Midgut	5785 ± 68	4 of 4	1.40	Up
Tubule	7160 ± 132	4 of 4	1.70	Up
Hindgut	5332 ± 115	4 of 4	1.30	Up
Heart	7112 ± 552	4 of 4	1.68	Up
Fat body	5828 ± 753	4 of 4	1.38	Up
Ovary	3542 ± 63	4 of 4	0.80	None
Testis	1083 ± 16	4 of 4	0.30	Down
Male accessory glands	9525 ± 327	4 of 4	2.20	Up
Virgin spermatheca	5841 ± 222	4 of 4	1.38	Up
Mated spermatheca	5950 ± 244	4 of 4	1.41	Up
Adult carcass	5924 ± 325	4 of 4	1.40	Up
Larval CNS	2760 ± 249	4 of 4	0.65	Down
Larval Salivary gland	8126 ± 429	4 of 4	1.92	Up
Larval midgut	5186 ± 116	4 of 4	1.22	Up
Larval tubule	5275 ± 54	4 of 4	1.20	Up
Larval hindgut	4487 ± 100	4 of 4	1.06	None
Larval fat body	8033 ± 902	4 of 4	1.90	Up
Larval trachea	6568 ± 218	4 of 4	1.55	Up
Larval carcass	4805 ± 367	4 of 4	1.13	None
S2 cells (growing)	4825 ± 108	4 of 4	1.14	None
Whole fly	4234 ± 267	4 of 4

Looking for FBgn0029785. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720