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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029791 through 18771 annotations produced 1 hits



(CG4096):

Annotation Number : CG4096
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029791
Gbrowse : chrX:5593219-5602547 (+) // 100.0 //
Probeset : 1626383_at
Accessions : protein= NP_001162678; /// NP_572247;, nucleotide= NM_001169207; /// NM_132019;
Pathway : 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0029791.
Homophila reports that CG4096 is a close match (1e-12) to human gene ARMD1;FBLN6;FIBL6;HMCN1 (NP_114141), a gene associated with {Macular degeneration, age-related, 1}, 603075 (3).
VDRC has 2 RNAi stocks for FBgn0029791 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 ± 24 of 413.30Up
Head19 ± 10 of 4 7.00Up
Eye119 ± 14 of 442.57Up
Thoracicoabdominal ganglion3 ± 00 of 4 1.10None
Salivary gland16 ± 20 of 4 5.77Up
Crop8 ± 30 of 4 3.00None
Midgut1 ± 00 of 4 0.60Down
Tubule19 ± 41 of 4 7.10Up
Hindgut6 ± 10 of 4 2.30None
Heart5 ± 20 of 4 1.95None
Fat body16 ± 121 of 4 5.73None
Ovary1 ± 00 of 4 0.50Down
Testis1 ± 00 of 4 0.60None
Male accessory glands2 ± 00 of 4 1.00None
Virgin spermatheca21 ± 23 of 4 7.69Up
Mated spermatheca18 ± 72 of 4 6.76None
Adult carcass6 ± 10 of 4 2.20None
Larval CNS48 ± 114 of 417.38Up
Larval Salivary gland8 ± 10 of 4 3.12Up
Larval midgut3 ± 00 of 4 1.08None
Larval tubule261 ± 124 of 493.30Up
Larval hindgut39 ± 44 of 414.00Up
Larval fat body4 ± 20 of 4 1.70None
Larval trachea220 ± 524 of 478.63Up
Larval carcass62 ± 24 of 422.38Up
S2 cells (growing)39 ± 12 of 414.16Up
Whole fly2 ± 00 of 4

Looking for FBgn0029791. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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