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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029798 through 18771 annotations produced 1 hits


Annotation Number : CG4078
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029798
Gbrowse : chrX:5641781-5645815 (+) // 100.0 //
Probeset : 1636909_at
Accessions : protein= NP_572254;, nucleotide= NM_132026;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // infer
FlyMine data for FBgn0029798.
BDGP gene expression has embryonic in situ data for CG4078: 13 pix of staining in 16 body parts.
Homophila reports that CG4078 is a close match (2e-36) to human gene COFS2;EM9;ERCC2;XPD (NP_000391), a gene associated with Cerebrooculofacioskeletal syndrome 2, 610756 (3);Trichothiodystrophy, 601675 (3);Xeroderma pigmentosum, group D, 278730 (3).
BioGrid reports that CG4078 interacts with CG10616 CG13030 CG2189 .
TRiP has 1 RNAi stocks for FBgn0029798 available for purchase.
VDRC has 3 RNAi stocks for FBgn0029798 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 24 of 4 0.60Down
Head31 24 of 4 0.50Down
Eye14 32 of 4 0.21Down
Thoracicoabdominal ganglion39 14 of 4 0.60Down
Salivary gland43 53 of 4 0.65Down
Crop34 14 of 4 0.50Down
Midgut34 14 of 4 0.50Down
Tubule35 34 of 4 0.50Down
Hindgut27 14 of 4 0.40Down
Heart20 14 of 4 0.30Down
Fat body44 44 of 4 0.66Down
Ovary138 64 of 4 2.10Up
Testis18 14 of 4 0.30Down
Male accessory glands26 24 of 4 0.40Down
Virgin spermatheca47 24 of 4 0.71Down
Mated spermatheca48 24 of 4 0.73Down
Adult carcass33 14 of 4 0.50Down
Larval CNS55 14 of 4 0.83None
Larval Salivary gland50 44 of 4 0.75None
Larval midgut34 14 of 4 0.51Down
Larval tubule27 12 of 4 0.40Down
Larval hindgut33 24 of 4 0.49Down
Larval fat body38 54 of 4 0.60Down
Larval trachea40 54 of 4 0.61Down
Larval carcass51 44 of 4 0.77None
S2 cells (growing)43 14 of 4 0.64Down
Whole fly67 54 of 4

Looking for FBgn0029798. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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