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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029799 through 18771 annotations produced 1 hits



(CG15772):

Annotation Number : CG15772
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029799
Gbrowse : chrX:5646556-5648074 (+) // 100.0 //
Probeset : 1640707_at
Accessions : protein= NP_572255;, nucleotide= NM_132027;
Pathway : 0019028 // viral capsid // inferred from electronic annotation
Interpro : 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferre
FlyMine data for FBgn0029799.
BDGP gene expression has embryonic in situ data for CG15772: 4 pix of staining in 1 body parts.
BioGrid reports that CG15772 interacts with CG1715 CG5949 CG1618 CG1660 CG18145 CG33129 CG3776 CG8199 CG9949 .
VDRC has 2 RNAi stocks for FBgn0029799 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain478 ± 54 of 438.80Up
Head107 ± 24 of 4 8.70Up
Eye66 ± 34 of 4 5.38Up
Thoracicoabdominal ganglion360 ± 104 of 429.30Up
Salivary gland5 ± 10 of 4 0.42Down
Crop21 ± 24 of 4 1.70Up
Midgut8 ± 00 of 4 0.60Down
Tubule3 ± 00 of 4 0.30Down
Hindgut5 ± 10 of 4 0.40Down
Heart9 ± 13 of 4 0.75None
Fat body17 ± 84 of 4 1.41None
Ovary1 ± 00 of 4 0.10Down
Testis6 ± 02 of 4 0.50Down
Male accessory glands4 ± 10 of 4 0.30Down
Virgin spermatheca9 ± 02 of 4 0.74None
Mated spermatheca7 ± 31 of 4 0.61None
Adult carcass16 ± 33 of 4 1.30None
Larval CNS4 ± 22 of 4 0.34Down
Larval Salivary gland5 ± 22 of 4 0.44Down
Larval midgut6 ± 10 of 4 0.54Down
Larval tubule2 ± 10 of 4 0.20Down
Larval hindgut4 ± 10 of 4 0.38Down
Larval fat body82 ± 234 of 4 6.70None
Larval trachea4 ± 21 of 4 0.33Down
Larval carcass1 ± 00 of 4 0.15Down
S2 cells (growing)2 ± 00 of 4 0.18Down
Whole fly12 ± 14 of 4

Looking for FBgn0029799. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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