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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029810 through 18771 annotations produced 1 hits



(CG12239):

Annotation Number : CG12239
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029810
Gbrowse : chrX:5686179-5688581 (+) // 100.0 //
Probeset : 1641513_at
Accessions : protein= NP_572265;, nucleotide= NM_132037;
FlyMine data for FBgn0029810.
BDGP gene expression has embryonic in situ data for CG12239: 19 pix of staining in 4 body parts.
TRiP has 1 RNAi stocks for FBgn0029810 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029810 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2607 774 of 426.90Up
Head917 254 of 4 9.50Up
Eye36 164 of 4 0.38Down
Thoracicoabdominal ganglion2916 984 of 430.10Up
Salivary gland19 20 of 4 0.20Down
Crop8 00 of 4 0.10Down
Midgut6 20 of 4 0.10Down
Tubule6 00 of 4 0.10Down
Hindgut5 20 of 4 0.10Down
Heart3 10 of 4 0.03Down
Fat body6 30 of 4 0.06Down
Ovary2 10 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands5 10 of 4 0.10Down
Virgin spermatheca6 10 of 4 0.06Down
Mated spermatheca2 10 of 4 0.03Down
Adult carcass29 41 of 4 0.30Down
Larval CNS698 1234 of 4 7.20Up
Larval Salivary gland1 00 of 4 0.01Down
Larval midgut8 20 of 4 0.08Down
Larval tubule5 10 of 4 0.10Down
Larval hindgut4 00 of 4 0.05Down
Larval fat body3 10 of 4 0.00Down
Larval trachea3 20 of 4 0.03Down
Larval carcass6 10 of 4 0.07Down
S2 cells (growing)5 10 of 4 0.06Down
Whole fly96 64 of 4

Looking for FBgn0029810. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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