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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029811 through 18771 annotations produced 1 hits



CG4052 (Cpr5C):

Annotation Number : CG4052
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029811
Gbrowse : chrX:5698763-5699267 (+) // 100.0 //
Probeset : 1640226_at
Accessions : protein= NP_572266;, nucleotide= NM_132038;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0029811.
VDRC has 3 RNAi stocks for FBgn0029811 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 1.00None
Head9 10 of 4 1.50None
Eye2 00 of 4 0.41Down
Thoracicoabdominal ganglion4 10 of 4 0.80None
Salivary gland9 30 of 4 1.67None
Crop7 10 of 4 1.30None
Midgut2 10 of 4 0.40Down
Tubule7 00 of 4 1.30Up
Hindgut12 10 of 4 2.20Up
Heart7 10 of 4 1.22None
Fat body12 30 of 4 2.13Up
Ovary6 10 of 4 1.10None
Testis7 10 of 4 1.30None
Male accessory glands8 20 of 4 1.40None
Virgin spermatheca7 10 of 4 1.22None
Mated spermatheca2 00 of 4 0.44Down
Adult carcass5 10 of 4 1.00None
Larval CNS7 30 of 4 1.20None
Larval Salivary gland4 10 of 4 0.82None
Larval midgut12 00 of 4 2.07Up
Larval tubule9 11 of 4 1.70Up
Larval hindgut11 00 of 4 1.93Up
Larval fat body10 20 of 4 1.70None
Larval trachea10 42 of 4 1.84None
Larval carcass6 20 of 4 1.07None
S2 cells (growing)9 01 of 4 1.52Up
Whole fly5 00 of 4

Looking for FBgn0029811. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime