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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029812 through 18771 annotations produced 1 hits



Proteasome beta2R1 subunit (Prosbeta2R1):

Annotation Number : CG18341
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029812
Gbrowse : chrX:5703038-5704090 (+) // 100.0 //
Probeset : 1637809_at
Accessions : protein= NP_572267;, nucleotide= NM_132039;
Pathway : 0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic
Interpro : 0004175 // endopeptidase activity // inferred from electronic annotation /// 0004298 // threonine-type endopeptidase act
FlyMine data for FBgn0029812.
BDGP gene expression has embryonic in situ data for CG18341: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0029812 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head4 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion7 ± 20 of 4 0.20Down
Salivary gland4 ± 00 of 4 0.13Down
Crop5 ± 10 of 4 0.20Down
Midgut11 ± 30 of 4 0.30Down
Tubule9 ± 10 of 4 0.30Down
Hindgut3 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.04Down
Fat body7 ± 50 of 4 0.23Down
Ovary5 ± 20 of 4 0.20Down
Testis228 ± 104 of 4 6.60Up
Male accessory glands6 ± 10 of 4 0.20Down
Virgin spermatheca5 ± 20 of 4 0.16Down
Mated spermatheca10 ± 20 of 4 0.30Down
Adult carcass8 ± 30 of 4 0.20Down
Larval CNS5 ± 20 of 4 0.16Down
Larval Salivary gland5 ± 20 of 4 0.15Down
Larval midgut8 ± 20 of 4 0.25Down
Larval tubule8 ± 10 of 4 0.30Down
Larval hindgut5 ± 10 of 4 0.14Down
Larval fat body45 ± 191 of 4 1.30None
Larval trachea3 ± 20 of 4 0.10Down
Larval carcass3 ± 00 of 4 0.10Down
S2 cells (growing)3 ± 10 of 4 0.11Down
Whole fly34 ± 34 of 4

Looking for FBgn0029812. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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