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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029817 through 18771 annotations produced 1 hits


Annotation Number : CG15764
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029817
Gbrowse : chrX:5763127-5764096 (+) // 100.0 //
Probeset : 1623879_at
Accessions : protein= NP_572272;, nucleotide= NM_132044;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029817.
BioGrid reports that CG15764 interacts with CG17494 CG8604 CG15845 CG1591 CG17309 CG2855 CG3210 CG3403 CG40127 CG4759 CG4845 CG6167 CG6605 CG7349 CG8282 CG9638 CG9837 .
VDRC has 3 RNAi stocks for FBgn0029817 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head4 10 of 4 0.10Down
Eye1 00 of 4 0.05Down
Thoracicoabdominal ganglion4 00 of 4 0.10Down
Salivary gland4 10 of 4 0.11Down
Crop4 10 of 4 0.10Down
Midgut4 00 of 4 0.10Down
Tubule4 00 of 4 0.10Down
Hindgut5 00 of 4 0.10Down
Heart1 00 of 4 0.03Down
Fat body4 20 of 4 0.10Down
Ovary2 10 of 4 0.10Down
Testis532 64 of 413.20Up
Male accessory glands3 10 of 4 0.10Down
Virgin spermatheca4 00 of 4 0.10Down
Mated spermatheca2 10 of 4 0.06Down
Adult carcass7 20 of 4 0.20Down
Larval CNS3 20 of 4 0.08Down
Larval Salivary gland6 10 of 4 0.15Down
Larval midgut6 10 of 4 0.17Down
Larval tubule3 00 of 4 0.10Down
Larval hindgut3 10 of 4 0.10Down
Larval fat body57 273 of 4 1.40None
Larval trachea3 30 of 4 0.09Down
Larval carcass4 00 of 4 0.10Down
S2 cells (growing)3 10 of 4 0.09Down
Whole fly40 14 of 4

Looking for FBgn0029817. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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