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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029818 through 18771 annotations produced 1 hits



(CG3033):

Annotation Number : CG3033
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029818
Gbrowse : chrX:5764871-5767397 (-) // 100.0 //
Probeset : 1632828_at
Accessions : protein= NP_572273;, nucleotide= NM_132045;
Pathway : 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0016021 // integral to membrane
FlyMine data for FBgn0029818.
BDGP gene expression has embryonic in situ data for CG3033: 12 pix of staining in 11 body parts.
VDRC has 2 RNAi stocks for FBgn0029818 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain202 ± 34 of 4 1.40Up
Head134 ± 94 of 4 0.90None
Eye134 ± 54 of 4 0.93None
Thoracicoabdominal ganglion193 ± 34 of 4 1.30Up
Salivary gland185 ± 84 of 4 1.28None
Crop96 ± 54 of 4 0.70Down
Midgut168 ± 44 of 4 1.20None
Tubule199 ± 44 of 4 1.40Up
Hindgut122 ± 44 of 4 0.80None
Heart160 ± 64 of 4 1.11None
Fat body196 ± 224 of 4 1.36Up
Ovary190 ± 34 of 4 1.30None
Testis136 ± 44 of 4 0.90None
Male accessory glands327 ± 94 of 4 2.30Up
Virgin spermatheca166 ± 104 of 4 1.15None
Mated spermatheca191 ± 44 of 4 1.32Up
Adult carcass121 ± 114 of 4 0.80None
Larval CNS304 ± 304 of 4 2.10Up
Larval Salivary gland326 ± 194 of 4 2.25Up
Larval midgut238 ± 34 of 4 1.64Up
Larval tubule155 ± 44 of 4 1.10None
Larval hindgut177 ± 54 of 4 1.22None
Larval fat body145 ± 94 of 4 1.00None
Larval trachea282 ± 54 of 4 1.95Up
Larval carcass145 ± 94 of 4 1.01None
S2 cells (growing)548 ± 64 of 4 3.78Up
Whole fly145 ± 144 of 4

Looking for FBgn0029818. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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