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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029819 through 18771 annotations produced 1 hits



(CG3016):

Annotation Number : CG3016
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029819
Gbrowse : chrX:5771028-5773866 (-) // 100.0 //
Probeset : 1638758_at
Accessions : protein= NP_572274;, nucleotide= NM_132046;
Interpro : 0004221 // ubiquitin thiolesterase activity // inferred from electronic annotation /// 0005515 // protein binding // inf
FlyMine data for FBgn0029819.
BioGrid reports that CG3016 interacts with CG5410 CG7958 CG3430 .
VDRC has 1 RNAi stocks for FBgn0029819 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain579 64 of 4 1.80Up
Head346 64 of 4 1.10Up
Eye366 164 of 4 1.14None
Thoracicoabdominal ganglion728 184 of 4 2.30Up
Salivary gland211 244 of 4 0.66Down
Crop340 64 of 4 1.10None
Midgut164 74 of 4 0.50Down
Tubule652 104 of 4 2.00Up
Hindgut296 84 of 4 0.90None
Heart255 94 of 4 0.80Down
Fat body260 124 of 4 0.81Down
Ovary447 54 of 4 1.40Up
Testis802 314 of 4 2.50Up
Male accessory glands184 64 of 4 0.60Down
Virgin spermatheca463 184 of 4 1.45Up
Mated spermatheca468 204 of 4 1.46Up
Adult carcass224 54 of 4 0.70Down
Larval CNS437 204 of 4 1.36Up
Larval Salivary gland276 34 of 4 0.86Down
Larval midgut161 24 of 4 0.50Down
Larval tubule461 134 of 4 1.40Up
Larval hindgut269 64 of 4 0.84Down
Larval fat body305 224 of 4 1.00None
Larval trachea297 254 of 4 0.93None
Larval carcass240 104 of 4 0.75Down
S2 cells (growing)243 54 of 4 0.76Down
Whole fly320 54 of 4

Looking for FBgn0029819. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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