Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029821 through 18771 annotations produced 1 hits



(CG4020):

Annotation Number : CG4020
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029821
Gbrowse : chrX:5799989-5801844 (+) // 100.0 //
Probeset : 1637829_at
Accessions : protein= NP_572276;, nucleotide= NM_132048;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0029821.
VDRC has 2 RNAi stocks for FBgn0029821 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 13 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye2 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion18 ± 94 of 4 0.10Down
Salivary gland9 ± 00 of 4 0.04Down
Crop17 ± 33 of 4 0.10Down
Midgut9 ± 00 of 4 0.00Down
Tubule20 ± 111 of 4 0.10Down
Hindgut9 ± 22 of 4 0.00Down
Heart1928 ± 354 of 4 7.55Up
Fat body2200 ± 1304 of 4 8.61Up
Ovary17 ± 14 of 4 0.10Down
Testis10 ± 14 of 4 0.00Down
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.01Down
Mated spermatheca6 ± 00 of 4 0.03Down
Adult carcass1935 ± 684 of 4 7.60Up
Larval CNS4 ± 02 of 4 0.02Down
Larval Salivary gland3 ± 00 of 4 0.01Down
Larval midgut7 ± 20 of 4 0.03Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut3 ± 11 of 4 0.01Down
Larval fat body7 ± 20 of 4 0.00Down
Larval trachea4 ± 51 of 4 0.02Down
Larval carcass354 ± 284 of 4 1.39Up
S2 cells (growing)7 ± 01 of 4 0.03Down
Whole fly255 ± 74 of 4

Looking for FBgn0029821. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime