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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029822 through 18771 annotations produced 2 hits



(CG12236):

Annotation Number : CG12236
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029822
Gbrowse : chrX:5802157-5805832 (+) // 99.71 //
Probeset : 1624189_at
Accessions : protein= NP_572277; /// NP_727050;, nucleotide= NM_132049; /// NM_167054;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from e
FlyMine data for FBgn0029822.
BDGP gene expression has embryonic in situ data for CG12236: 13 pix of staining in 4 body parts.
TRiP has 1 RNAi stocks for FBgn0029822 available for purchase.
VDRC has 1 RNAi stocks for FBgn0029822 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain148 14 of 4 2.60Up
Head41 44 of 4 0.70Down
Eye169 134 of 4 2.99Up
Thoracicoabdominal ganglion83 34 of 4 1.50Up
Salivary gland39 24 of 4 0.69Down
Crop26 24 of 4 0.50Down
Midgut29 24 of 4 0.50Down
Tubule31 14 of 4 0.60Down
Hindgut28 24 of 4 0.50Down
Heart39 34 of 4 0.70Down
Fat body26 54 of 4 0.46Down
Ovary204 34 of 4 3.60Up
Testis8 04 of 4 0.10Down
Male accessory glands21 23 of 4 0.40Down
Virgin spermatheca54 24 of 4 0.97None
Mated spermatheca63 64 of 4 1.11None
Adult carcass22 24 of 4 0.40Down
Larval CNS106 84 of 4 1.88Up
Larval Salivary gland33 24 of 4 0.59Down
Larval midgut26 14 of 4 0.47Down
Larval tubule25 14 of 4 0.50Down
Larval hindgut27 14 of 4 0.48Down
Larval fat body21 24 of 4 0.40Down
Larval trachea92 74 of 4 1.63Up
Larval carcass27 24 of 4 0.48Down
S2 cells (growing)50 14 of 4 0.89None
Whole fly56 44 of 4



(CG12236):

Annotation Number : CG12236
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029822
Gbrowse : chrX:5802157-5807112 (+) // 100.0 //
Probeset : 1634451_at
Accessions : protein= NP_572277; /// NP_727050;, nucleotide= NM_132049; /// NM_167054;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from e
FlyMine data for FBgn0029822.
BDGP gene expression has embryonic in situ data for CG12236: 13 pix of staining in 4 body parts.
TRiP has 1 RNAi stocks for FBgn0029822 available for purchase.
VDRC has 1 RNAi stocks for FBgn0029822 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 34 of 4 0.80None
Head27 04 of 4 0.80Down
Eye67 34 of 4 1.95Up
Thoracicoabdominal ganglion22 24 of 4 0.70Down
Salivary gland58 64 of 4 1.71Up
Crop31 14 of 4 0.90None
Midgut16 02 of 4 0.50Down
Tubule14 02 of 4 0.40Down
Hindgut28 34 of 4 0.80None
Heart18 04 of 4 0.53Down
Fat body16 34 of 4 0.48Down
Ovary75 14 of 4 2.20Up
Testis10 04 of 4 0.30Down
Male accessory glands32 44 of 4 0.90None
Virgin spermatheca25 14 of 4 0.75Down
Mated spermatheca19 24 of 4 0.56Down
Adult carcass27 42 of 4 0.80None
Larval CNS45 54 of 4 1.32Up
Larval Salivary gland40 24 of 4 1.18None
Larval midgut15 23 of 4 0.45Down
Larval tubule14 14 of 4 0.40Down
Larval hindgut24 14 of 4 0.70Down
Larval fat body21 13 of 4 0.60Down
Larval trachea49 74 of 4 1.45Up
Larval carcass23 04 of 4 0.69Down
S2 cells (growing)63 04 of 4 1.83Up
Whole fly34 04 of 4

Looking for FBgn0029822. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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