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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029825 through 18771 annotations produced 1 hits



(CG12728):

Annotation Number : CG12728
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029825
Gbrowse : chrX:5836640-5838420 (+) // 100.0 //
Probeset : 1633728_at
Accessions : protein= NP_572280;, nucleotide= NM_132052;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0029825.
BioGrid reports that CG12728 interacts with CG4218 CG8507 .
VDRC has 5 RNAi stocks for FBgn0029825 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain42 ± 34 of 4 1.10None
Head11 ± 14 of 4 0.30Down
Eye14 ± 14 of 4 0.40Down
Thoracicoabdominal ganglion20 ± 34 of 4 0.60Down
Salivary gland9 ± 21 of 4 0.24Down
Crop8 ± 13 of 4 0.20Down
Midgut17 ± 24 of 4 0.50Down
Tubule9 ± 02 of 4 0.20Down
Hindgut9 ± 12 of 4 0.30Down
Heart15 ± 14 of 4 0.40Down
Fat body18 ± 54 of 4 0.49Down
Ovary80 ± 54 of 4 2.10Up
Testis31 ± 14 of 4 0.80None
Male accessory glands40 ± 34 of 4 1.10None
Virgin spermatheca5 ± 00 of 4 0.14Down
Mated spermatheca7 ± 13 of 4 0.21Down
Adult carcass8 ± 21 of 4 0.20Down
Larval CNS60 ± 164 of 4 1.61None
Larval Salivary gland9 ± 03 of 4 0.25Down
Larval midgut9 ± 22 of 4 0.26Down
Larval tubule16 ± 14 of 4 0.40Down
Larval hindgut19 ± 34 of 4 0.51Down
Larval fat body18 ± 33 of 4 0.50Down
Larval trachea21 ± 34 of 4 0.58Down
Larval carcass16 ± 24 of 4 0.44Down
S2 cells (growing)16 ± 24 of 4 0.44Down
Whole fly37 ± 44 of 4

Looking for FBgn0029825. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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