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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029826 through 18771 annotations produced 1 hits



(CG6041):

Annotation Number : CG6041
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029826
Gbrowse : chrX:5842222-5844241 (+) // 100.0 //
Probeset : 1627432_at
Accessions : protein= NP_572281;, nucleotide= NM_132053;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0029826.
BDGP gene expression has embryonic in situ data for CG6041: 4 pix of staining in 1 body parts.
Homophila reports that CG6041 is a close match (5e-13) to human gene C1S (NP_958850), a gene associated with C1r/C1s deficiency, combined (1);C1s deficiency, isolated (3).
VDRC has 3 RNAi stocks for FBgn0029826 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain97 84 of 4 1.90Up
Head25 24 of 4 0.50Down
Eye30 34 of 4 0.60Down
Thoracicoabdominal ganglion119 14 of 4 2.30Up
Salivary gland5 00 of 4 0.10Down
Crop18 20 of 4 0.40Down
Midgut668 404 of 412.90Up
Tubule39 53 of 4 0.80Down
Hindgut343 144 of 4 6.70Up
Heart10 10 of 4 0.20Down
Fat body2 10 of 4 0.04Down
Ovary5 10 of 4 0.10Down
Testis6 10 of 4 0.10Down
Male accessory glands20 30 of 4 0.40Down
Virgin spermatheca11 10 of 4 0.22Down
Mated spermatheca9 20 of 4 0.17Down
Adult carcass13 30 of 4 0.30Down
Larval CNS80 64 of 4 1.55Up
Larval Salivary gland11 20 of 4 0.23Down
Larval midgut796 384 of 415.43Up
Larval tubule216 494 of 4 4.20Up
Larval hindgut942 884 of 418.25Up
Larval fat body12 20 of 4 0.20Down
Larval trachea25 34 of 4 0.48Down
Larval carcass21 01 of 4 0.42Down
S2 cells (growing)62 24 of 4 1.21None
Whole fly51 54 of 4

Looking for FBgn0029826. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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