Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
About & FAQ
Top 50
Original data
Interesting meta-analysis

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029827 through 18771 annotations produced 1 hits


Annotation Number : CG6048
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029827
Gbrowse : chrX:5846630-5848043 (+) // 100.0 //
Probeset : 1638039_at
Accessions : protein= NP_572282;, nucleotide= NM_132054;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0029827.
Homophila reports that CG6048 is a close match (3e-12) to human gene F7 (NP_000122), a gene associated with Factor VII deficiency (3);{Myocardial infarction, decreased susceptibility to} (3).
VDRC has 2 RNAi stocks for FBgn0029827 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head8 11 of 4 0.10Down
Eye5 10 of 4 0.06Down
Thoracicoabdominal ganglion3 10 of 4 0.00Down
Salivary gland4 00 of 4 0.05Down
Crop2 10 of 4 0.00Down
Midgut1218 234 of 412.80Up
Tubule11 10 of 4 0.10Down
Hindgut65 24 of 4 0.70None
Heart1 00 of 4 0.01Down
Fat body3 20 of 4 0.03Down
Ovary2 10 of 4 0.00Down
Testis2 10 of 4 0.00Down
Male accessory glands4 10 of 4 0.00Down
Virgin spermatheca2 10 of 4 0.03Down
Mated spermatheca1 00 of 4 0.01Down
Adult carcass5 21 of 4 0.10Down
Larval CNS0 00 of 4 0.01Down
Larval Salivary gland2 00 of 4 0.02Down
Larval midgut367 314 of 4 3.86Up
Larval tubule17 51 of 4 0.20Down
Larval hindgut136 34 of 4 1.44Up
Larval fat body10 30 of 4 0.10Down
Larval trachea0 00 of 4 0.01Down
Larval carcass1 00 of 4 0.01Down
S2 cells (growing)2 10 of 4 0.03Down
Whole fly95 124 of 4

Looking for FBgn0029827. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime