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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029828 through 18771 annotations produced 1 hits



(CG6067):

Annotation Number : CG6067
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029828
Gbrowse : chrX:5849662-5852317 (+) // 100.0 //
Probeset : 1623298_at
Accessions : protein= NP_572283;, nucleotide= NM_132055;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0029828.
BDGP gene expression has embryonic in situ data for CG6067: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0029828 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 04 of 4 0.10Down
Head443 ± 374 of 4 2.90Up
Eye321 ± 704 of 4 2.10None
Thoracicoabdominal ganglion10 ± 21 of 4 0.10Down
Salivary gland8 ± 30 of 4 0.05Down
Crop12 ± 20 of 4 0.10Down
Midgut1179 ± 264 of 4 7.70Up
Tubule8 ± 11 of 4 0.10Down
Hindgut52 ± 24 of 4 0.30None
Heart710 ± 674 of 4 4.64Up
Fat body1447 ± 1924 of 4 9.44Up
Ovary0 ± 00 of 4 0.00Down
Testis3 ± 01 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1374 ± 944 of 4 8.97Up
Mated spermatheca1210 ± 1254 of 4 7.90Up
Adult carcass532 ± 394 of 4 3.50Up
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland15 ± 31 of 4 0.10Down
Larval midgut169 ± 114 of 4 1.11None
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut10 ± 22 of 4 0.07Down
Larval fat body478 ± 754 of 4 3.10Up
Larval trachea8 ± 92 of 4 0.06Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly153 ± 374 of 4

Looking for FBgn0029828. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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