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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029835 through 18771 annotations produced 1 hits



(CG5921):

Annotation Number : CG5921
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029835
Gbrowse : chrX:5953942-5958324 (+) // 100.0 //
Probeset : 1633783_a_at
Accessions : protein= NP_572290; /// NP_727061;, nucleotide= NM_132062; /// NM_167058;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0029835.
Homophila reports that CG5921 is a close match (1e-20) to human gene CIP98;DFNB31;KIAA1526;USH2D;WHRN (NP_056219), a gene associated with Deafness, autosomal recessive 31, 607084 (3);Usher syndrome, type IID, 611383 (3).
VDRC has 2 RNAi stocks for FBgn0029835 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head12 20 of 4 0.40None
Eye27 13 of 4 0.86None
Thoracicoabdominal ganglion3 10 of 4 0.10Down
Salivary gland2 00 of 4 0.09Down
Crop13 20 of 4 0.40None
Midgut358 194 of 411.10Up
Tubule72 34 of 4 2.20Up
Hindgut97 44 of 4 3.00Up
Heart1 00 of 4 0.05Down
Fat body3 20 of 4 0.11Down
Ovary4 10 of 4 0.10Down
Testis0 00 of 4 0.00Down
Male accessory glands5 20 of 4 0.20Down
Virgin spermatheca3 10 of 4 0.11Down
Mated spermatheca3 10 of 4 0.10Down
Adult carcass11 30 of 4 0.30Down
Larval CNS1 00 of 4 0.04Down
Larval Salivary gland3 10 of 4 0.11Down
Larval midgut161 114 of 4 5.01Up
Larval tubule296 164 of 4 9.20Up
Larval hindgut87 64 of 4 2.73Up
Larval fat body6 20 of 4 0.20Down
Larval trachea1 00 of 4 0.05Down
Larval carcass1 00 of 4 0.06Down
S2 cells (growing)1 00 of 4 0.03Down
Whole fly32 74 of 4

Looking for FBgn0029835. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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