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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029836 through 18771 annotations produced 1 hits



(CG5928):

Annotation Number : CG5928
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029836
Gbrowse : chrX:5961992-5963299 (+) // 100.0 //
Probeset : 1636429_at
Accessions : protein= NP_001033834; /// NP_572291;, nucleotide= NM_001038745; /// NM_132063;
FlyMine data for FBgn0029836.
BDGP gene expression has embryonic in situ data for CG5928: 10 pix of staining in 9 body parts.
VDRC has 2 RNAi stocks for FBgn0029836 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.20Down
Head9 13 of 4 0.50Down
Eye12 23 of 4 0.71None
Thoracicoabdominal ganglion5 21 of 4 0.30Down
Salivary gland15 31 of 4 0.85None
Crop230 54 of 412.70Up
Midgut8 00 of 4 0.50Down
Tubule5 00 of 4 0.30Down
Hindgut185 134 of 410.20Up
Heart9 12 of 4 0.54Down
Fat body10 23 of 4 0.59None
Ovary4 00 of 4 0.20Down
Testis1 00 of 4 0.10Down
Male accessory glands10 10 of 4 0.60Down
Virgin spermatheca8 12 of 4 0.49Down
Mated spermatheca5 10 of 4 0.32Down
Adult carcass11 10 of 4 0.60None
Larval CNS5 01 of 4 0.28Down
Larval Salivary gland11 20 of 4 0.63None
Larval midgut14 20 of 4 0.81None
Larval tubule8 20 of 4 0.40Down
Larval hindgut15 10 of 4 0.85None
Larval fat body6 20 of 4 0.40Down
Larval trachea159 254 of 4 8.78Up
Larval carcass10 20 of 4 0.60None
S2 cells (growing)4 02 of 4 0.26Down
Whole fly18 24 of 4

Looking for FBgn0029836. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime