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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029838 through 18771 annotations produced 1 hits



(CG4666):

Annotation Number : CG4666
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029838
Gbrowse : chrX:5970104-5971515 (-) // 99.53 //
Probeset : 1635086_at
Accessions : protein= NP_572292;, nucleotide= NM_132064;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
FlyMine data for FBgn0029838.
BDGP gene expression has embryonic in situ data for CG4666: 11 pix of staining in 5 body parts.
VDRC has 2 RNAi stocks for FBgn0029838 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 32 of 4 0.10Down
Head45 ± 64 of 4 0.10Down
Eye43 ± 34 of 4 0.14Down
Thoracicoabdominal ganglion26 ± 114 of 4 0.10Down
Salivary gland546 ± 364 of 4 1.71Up
Crop280 ± 184 of 4 0.90None
Midgut69 ± 44 of 4 0.20Down
Tubule25 ± 91 of 4 0.10Down
Hindgut444 ± 164 of 4 1.40None
Heart2828 ± 1834 of 4 8.88Up
Fat body2486 ± 2034 of 4 7.81Up
Ovary29 ± 24 of 4 0.10Down
Testis22 ± 24 of 4 0.10Down
Male accessory glands17 ± 21 of 4 0.10Down
Virgin spermatheca22 ± 23 of 4 0.07Down
Mated spermatheca28 ± 54 of 4 0.09Down
Adult carcass1882 ± 1974 of 4 5.90Up
Larval CNS17 ± 24 of 4 0.06Down
Larval Salivary gland7 ± 10 of 4 0.02Down
Larval midgut36 ± 34 of 4 0.11Down
Larval tubule16 ± 14 of 4 0.10Down
Larval hindgut27 ± 04 of 4 0.09Down
Larval fat body5 ± 20 of 4 0.00Down
Larval trachea35 ± 114 of 4 0.11Down
Larval carcass689 ± 504 of 4 2.16Up
S2 cells (growing)59 ± 44 of 4 0.19Down
Whole fly318 ± 644 of 4

Looking for FBgn0029838. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime