Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029839 through 18771 annotations produced 1 hits



(CG4660):

Annotation Number : CG4660
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029839
Gbrowse : chrX:5972743-5975400 (-) // 100.0 //
Probeset : 1640206_at
Accessions : protein= NP_572293;, nucleotide= NM_132065;
FlyMine data for FBgn0029839.
BDGP gene expression has embryonic in situ data for CG4660: 25 pix of staining in 2 body parts.
VDRC has 1 RNAi stocks for FBgn0029839 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain120 ± 54 of 4 7.30Up
Head67 ± 44 of 4 4.10Up
Eye172 ± 144 of 410.36Up
Thoracicoabdominal ganglion90 ± 14 of 4 5.50Up
Salivary gland14 ± 11 of 4 0.88None
Crop222 ± 134 of 413.40Up
Midgut35 ± 34 of 4 2.10Up
Tubule5 ± 00 of 4 0.30Down
Hindgut260 ± 14 of 415.70Up
Heart5 ± 01 of 4 0.31Down
Fat body8 ± 33 of 4 0.53Down
Ovary1 ± 10 of 4 0.10Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands2 ± 10 of 4 0.20Down
Virgin spermatheca5 ± 13 of 4 0.34Down
Mated spermatheca5 ± 11 of 4 0.36Down
Adult carcass11 ± 22 of 4 0.70None
Larval CNS62 ± 64 of 4 3.75Up
Larval Salivary gland9 ± 20 of 4 0.56Down
Larval midgut2 ± 00 of 4 0.14Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut2 ± 00 of 4 0.17Down
Larval fat body6 ± 10 of 4 0.40Down
Larval trachea8 ± 61 of 4 0.54None
Larval carcass4 ± 10 of 4 0.25Down
S2 cells (growing)2 ± 10 of 4 0.18Down
Whole fly16 ± 04 of 4

Looking for FBgn0029839. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime