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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029853 through 18771 annotations produced 1 hits



(CG3781):

Annotation Number : CG3781
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029853
Gbrowse : chrX:6155272-6156153 (+) // 100.0 //
Probeset : 1636231_at
Accessions : protein= NP_572303;, nucleotide= NM_132075;
FlyMine data for FBgn0029853.
VDRC has 2 RNAi stocks for FBgn0029853 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 ± 04 of 4 0.70None
Head66 ± 24 of 4 1.10None
Eye105 ± 114 of 4 1.77Up
Thoracicoabdominal ganglion42 ± 34 of 4 0.70Down
Salivary gland243 ± 104 of 4 4.08Up
Crop63 ± 24 of 4 1.10None
Midgut60 ± 14 of 4 1.00None
Tubule73 ± 14 of 4 1.20Up
Hindgut55 ± 24 of 4 0.90None
Heart81 ± 44 of 4 1.37Up
Fat body92 ± 34 of 4 1.55Up
Ovary69 ± 14 of 4 1.20None
Testis105 ± 54 of 4 1.80Up
Male accessory glands317 ± 94 of 4 5.30Up
Virgin spermatheca102 ± 34 of 4 1.71Up
Mated spermatheca90 ± 64 of 4 1.52Up
Adult carcass60 ± 14 of 4 1.00None
Larval CNS47 ± 54 of 4 0.80None
Larval Salivary gland180 ± 34 of 4 3.02Up
Larval midgut41 ± 04 of 4 0.70Down
Larval tubule91 ± 54 of 4 1.50Up
Larval hindgut49 ± 34 of 4 0.83None
Larval fat body78 ± 94 of 4 1.30None
Larval trachea70 ± 104 of 4 1.18None
Larval carcass59 ± 34 of 4 1.00None
S2 cells (growing)154 ± 54 of 4 2.59Up
Whole fly59 ± 54 of 4

Looking for FBgn0029853. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime