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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029859 through 18771 annotations produced 1 hits



/// (CG15891 /// CG15892):

Annotation Number : CG32918
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029859 /// FBgn0029860
Gbrowse : chrX:6187136-6189148 (-) // 100.0 //
Probeset : 1629687_s_at
Accessions : protein= NP_001027040; /// NP_001027041; /// NP_727085;, nucleotide= NM_001031869; /// NM_001031870; /// NM_167069;
FlyMine data for FBgn0029859 /// FBgn0029860.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 10 of 4 0.10Down
Head11 20 of 4 0.10Down
Eye20 13 of 4 0.25Down
Thoracicoabdominal ganglion18 20 of 4 0.20Down
Salivary gland15 40 of 4 0.18Down
Crop13 20 of 4 0.20Down
Midgut1 00 of 4 0.00Down
Tubule6 20 of 4 0.10Down
Hindgut7 20 of 4 0.10Down
Heart0 00 of 4 0.01Down
Fat body9 40 of 4 0.11Down
Ovary1 00 of 4 0.00Down
Testis1134 214 of 413.60Up
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca7 20 of 4 0.08Down
Mated spermatheca3 00 of 4 0.04Down
Adult carcass7 20 of 4 0.10Down
Larval CNS20 23 of 4 0.24Down
Larval Salivary gland1 00 of 4 0.02Down
Larval midgut1 00 of 4 0.01Down
Larval tubule7 20 of 4 0.10Down
Larval hindgut5 10 of 4 0.06Down
Larval fat body132 693 of 4 1.60None
Larval trachea14 32 of 4 0.17Down
Larval carcass2 00 of 4 0.03Down
S2 cells (growing)8 00 of 4 0.10Down
Whole fly83 44 of 4

Looking for FBgn0029859. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime