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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029863 through 18771 annotations produced 1 hits



(CG3823):

Annotation Number : CG3823
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029863
Gbrowse : chrX:6198022-6200778 (+) // 100.0 //
Probeset : 1628388_at
Accessions : protein= NP_572313;, nucleotide= NM_132085;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008431 // vitamin E binding // inferred from
FlyMine data for FBgn0029863.
BDGP gene expression has embryonic in situ data for CG3823: 4 pix of staining in 1 body parts.
Homophila reports that CG3823 is a close match (5e-15) to human gene AVED;TTP1;TTPA (NP_000361), a gene associated with Ataxia with isolated vitamin E deficiency, 277460 (3).
VDRC has 2 RNAi stocks for FBgn0029863 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 13 of 4 0.10Down
Head138 104 of 4 2.00Up
Eye130 214 of 4 1.90None
Thoracicoabdominal ganglion8 11 of 4 0.10Down
Salivary gland14 42 of 4 0.22Down
Crop1679 424 of 424.40Up
Midgut57 44 of 4 0.80None
Tubule6 00 of 4 0.10Down
Hindgut762 294 of 411.10Up
Heart8 12 of 4 0.12Down
Fat body10 20 of 4 0.16Down
Ovary9 04 of 4 0.10Down
Testis7 00 of 4 0.10Down
Male accessory glands13 12 of 4 0.20Down
Virgin spermatheca22 13 of 4 0.32Down
Mated spermatheca28 44 of 4 0.41Down
Adult carcass57 94 of 4 0.80None
Larval CNS9 14 of 4 0.13Down
Larval Salivary gland16 03 of 4 0.24Down
Larval midgut4 10 of 4 0.07Down
Larval tubule9 32 of 4 0.10Down
Larval hindgut12 12 of 4 0.18Down
Larval fat body11 12 of 4 0.20Down
Larval trachea81 174 of 4 1.18None
Larval carcass24 31 of 4 0.36Down
S2 cells (growing)7 01 of 4 0.11Down
Whole fly68 74 of 4

Looking for FBgn0029863. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime