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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029864 through 18771 annotations produced 2 hits



(CG15894):

Annotation Number : CG15894
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029864
Gbrowse : chrX:6214521-6221886 (+) // 100.0 //
Probeset : 1623592_at
Accessions : protein= NP_001096891; /// NP_572314;, nucleotide= NM_001103421; /// NM_132086;
FlyMine data for FBgn0029864.
VDRC has 6 RNAi stocks for FBgn0029864 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 24 of 4 7.50Up
Head5 10 of 4 1.40None
Eye2 10 of 4 0.65None
Thoracicoabdominal ganglion11 22 of 4 3.10Up
Salivary gland4 20 of 4 1.34None
Crop3 10 of 4 0.90None
Midgut1 00 of 4 0.40None
Tubule3 00 of 4 1.00None
Hindgut1 00 of 4 0.40None
Heart4 10 of 4 1.29None
Fat body2 20 of 4 0.79None
Ovary0 00 of 4 0.20None
Testis3 11 of 4 1.10None
Male accessory glands2 00 of 4 0.50None
Virgin spermatheca2 00 of 4 0.53None
Mated spermatheca2 10 of 4 0.55None
Adult carcass4 20 of 4 1.10None
Larval CNS6 13 of 4 1.68None
Larval Salivary gland3 10 of 4 0.99None
Larval midgut2 00 of 4 0.68None
Larval tubule3 11 of 4 0.90None
Larval hindgut2 00 of 4 0.57None
Larval fat body6 10 of 4 1.90None
Larval trachea4 30 of 4 1.10None
Larval carcass1 00 of 4 0.32None
S2 cells (growing)0 00 of 4 0.27None
Whole fly3 10 of 4



(CG15894):

Annotation Number : CT34112
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029864
Gbrowse : chrX:6210130-6210573 (+) // 100.0 //
Probeset : 1632075_at
Accessions : protein= NP_001096891; /// NP_572314;, nucleotide= NM_001103421; /// NM_132086;
FlyMine data for FBgn0029864.
VDRC has 6 RNAi stocks for FBgn0029864 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.80None
Head9 10 of 4 1.20None
Eye5 10 of 4 0.67None
Thoracicoabdominal ganglion2 00 of 4 0.30None
Salivary gland8 30 of 4 1.10None
Crop7 20 of 4 1.00None
Midgut13 00 of 4 1.80None
Tubule5 00 of 4 0.70Down
Hindgut4 00 of 4 0.70None
Heart3 10 of 4 0.51None
Fat body13 32 of 4 1.86None
Ovary5 00 of 4 0.70None
Testis1 10 of 4 0.30None
Male accessory glands6 30 of 4 0.90None
Virgin spermatheca6 10 of 4 0.82None
Mated spermatheca8 10 of 4 1.10None
Adult carcass6 20 of 4 0.80None
Larval CNS3 10 of 4 0.46None
Larval Salivary gland5 10 of 4 0.70None
Larval midgut8 20 of 4 1.14None
Larval tubule5 10 of 4 0.70None
Larval hindgut6 00 of 4 0.88None
Larval fat body4 10 of 4 0.70None
Larval trachea2 20 of 4 0.33None
Larval carcass4 00 of 4 0.55None
S2 cells (growing)10 10 of 4 1.41None
Whole fly7 20 of 4

Looking for FBgn0029864. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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