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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029870 through 18771 annotations produced 1 hits



Drosophila mitofusin (Marf):

Annotation Number : CG3869
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029870
Gbrowse : chrX:6259981-6264960 (+) // 100.0 //
Probeset : 1625464_at
Accessions : protein= NP_572320; /// NP_996357; /// NP_996358;, nucleotide= NM_132092; /// NM_206634; /// NM_206635;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from s
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0029870.
Homophila reports that CG3869 is a close match (0) to human gene CMT2A2;KIAA0214;MFN2 (NP_055689), a gene associated with Charcot-Marie-Tooth disease, type 2A2, 609260 (3);Hereditary motor and sensory neuropathy VI, 601152 (3).
BioGrid reports that CG3869 interacts with CG6428 .
TRiP has 1 RNAi stocks for FBgn0029870 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029870 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain782 184 of 4 1.40Up
Head656 164 of 4 1.20Up
Eye896 94 of 4 1.60Up
Thoracicoabdominal ganglion865 84 of 4 1.50Up
Salivary gland626 174 of 4 1.12None
Crop691 284 of 4 1.20Up
Midgut595 164 of 4 1.10None
Tubule1399 604 of 4 2.50Up
Hindgut823 224 of 4 1.50Up
Heart1045 494 of 4 1.87Up
Fat body1090 784 of 4 1.95Up
Ovary466 94 of 4 0.80None
Testis66 84 of 4 0.10Down
Male accessory glands885 354 of 4 1.60Up
Virgin spermatheca1436 664 of 4 2.57Up
Mated spermatheca1215 844 of 4 2.17Up
Adult carcass1167 544 of 4 2.10Up
Larval CNS385 284 of 4 0.69Down
Larval Salivary gland358 214 of 4 0.64Down
Larval midgut743 334 of 4 1.33Up
Larval tubule508 184 of 4 0.90None
Larval hindgut761 274 of 4 1.36Up
Larval fat body251 184 of 4 0.40Down
Larval trachea672 734 of 4 1.20None
Larval carcass625 384 of 4 1.12None
S2 cells (growing)304 34 of 4 0.55Down
Whole fly559 324 of 4

Looking for FBgn0029870. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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