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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029874 through 18771 annotations produced 1 hits



(CG3342):

Annotation Number : CG3342
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029874
Gbrowse : chrX:6420138-6421872 (-) // 99.7 //
Probeset : 1639994_at
Accessions : protein= NP_572324;, nucleotide= NM_132096;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0042802 // identical protein binding // inferred fr
FlyMine data for FBgn0029874.
BioGrid reports that CG3342 interacts with CG3342 CG3613 CG3929 CG6985 CG8173 CG3610 CG5923 CG6569 CG7757 CG7967 CG8388 CG8851 CG9784 .
VDRC has 2 RNAi stocks for FBgn0029874 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 14 of 4 0.90None
Head28 14 of 4 0.60Down
Eye33 24 of 4 0.67Down
Thoracicoabdominal ganglion43 44 of 4 0.90None
Salivary gland63 24 of 4 1.27None
Crop44 54 of 4 0.90None
Midgut50 14 of 4 1.00None
Tubule41 54 of 4 0.80None
Hindgut46 14 of 4 0.90None
Heart26 24 of 4 0.52Down
Fat body28 34 of 4 0.57Down
Ovary82 14 of 4 1.70Up
Testis19 14 of 4 0.40Down
Male accessory glands55 74 of 4 1.10None
Virgin spermatheca40 44 of 4 0.81None
Mated spermatheca41 24 of 4 0.83None
Adult carcass34 24 of 4 0.70None
Larval CNS58 54 of 4 1.18None
Larval Salivary gland59 34 of 4 1.20None
Larval midgut63 44 of 4 1.27None
Larval tubule62 24 of 4 1.30None
Larval hindgut43 44 of 4 0.87None
Larval fat body40 14 of 4 0.80None
Larval trachea70 54 of 4 1.40Up
Larval carcass45 24 of 4 0.91None
S2 cells (growing)69 34 of 4 1.39Up
Whole fly49 54 of 4

Looking for FBgn0029874. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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