Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029877 through 18771 annotations produced 1 hits


(CG17717):

Annotation Number : CG17717
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029877
Gbrowse : chrX:6483322-6484680 (+) // 100.0 //
Probeset : 1631206_a_at
Accessions : protein= NP_572327; /// NP_727100;, nucleotide= NM_132099; /// NM_167078;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0029877.
BDGP gene expression has embryonic in situ data for CG17717: 2 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0029877 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.10Down
Head4 ± 11 of 4 0.10Down
Eye3 ± 01 of 4 0.08Down
Thoracicoabdominal ganglion5 ± 11 of 4 0.10Down
Salivary gland14 ± 11 of 4 0.30Down
Crop7 ± 22 of 4 0.10Down
Midgut6 ± 10 of 4 0.10Down
Tubule6 ± 10 of 4 0.10Down
Hindgut3 ± 10 of 4 0.10Down
Heart4 ± 11 of 4 0.09Down
Fat body6 ± 11 of 4 0.13Down
Ovary1 ± 00 of 4 0.00Down
Testis667 ± 224 of 414.00Up
Male accessory glands6 ± 20 of 4 0.10Down
Virgin spermatheca6 ± 00 of 4 0.14Down
Mated spermatheca5 ± 11 of 4 0.11Down
Adult carcass8 ± 10 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.03Down
Larval Salivary gland5 ± 10 of 4 0.12Down
Larval midgut8 ± 10 of 4 0.18Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut4 ± 00 of 4 0.08Down
Larval fat body59 ± 274 of 4 1.20None
Larval trachea3 ± 31 of 4 0.08Down
Larval carcass4 ± 10 of 4 0.10Down
S2 cells (growing)5 ± 11 of 4 0.11Down
Whole fly47 ± 24 of 4

Looking for FBgn0029877. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime