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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029878 through 18771 annotations produced 1 hits

Protein interacting with APP tail-1 (Pat1):

Annotation Number : CG10695
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029878
Gbrowse : chrX:6484810-6490663 (+) // 99.88 //
Probeset : 1631412_at
Accessions : protein= NP_572328;, nucleotide= NM_132100;
Pathway : engulfment // inferred from mutant phenotype /// 0007018 // microtubule-based movement // inferred from sequence or str
Interpro : 0005871 // kinesin complex // inferred from sequence or structural similarity
FlyMine data for FBgn0029878.
BDGP gene expression has embryonic in situ data for CG10695: 4 pix of staining in 1 body parts.
BioGrid reports that CG10695 interacts with CG17658 CG6470 CG6511 CG7761 CG10979 CG11896 CG1244 CG12692 CG14506 CG14534 CG15707 CG1632 CG17085 CG17255 CG2199 CG30101 CG4004 CG4328 CG4394 CG4887 CG5445 CG33484 CG5746 CG7867 CG8086 CG8567 CG9277 CG9282 .
VDRC has 2 RNAi stocks for FBgn0029878 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain396 84 of 4 1.90Up
Head178 184 of 4 0.90None
Eye190 14 of 4 0.92None
Thoracicoabdominal ganglion317 84 of 4 1.50Up
Salivary gland576 334 of 4 2.78Up
Crop169 54 of 4 0.80None
Midgut141 44 of 4 0.70Down
Tubule343 414 of 4 1.70Up
Hindgut221 54 of 4 1.10None
Heart147 114 of 4 0.71Down
Fat body167 374 of 4 0.81None
Ovary240 174 of 4 1.20None
Testis49 34 of 4 0.20Down
Male accessory glands204 154 of 4 1.00None
Virgin spermatheca139 34 of 4 0.67Down
Mated spermatheca162 94 of 4 0.78Down
Adult carcass176 84 of 4 0.90None
Larval CNS377 524 of 4 1.82Up
Larval Salivary gland185 94 of 4 0.89None
Larval midgut112 74 of 4 0.54Down
Larval tubule640 184 of 4 3.10Up
Larval hindgut279 104 of 4 1.35Up
Larval fat body575 704 of 4 2.80Up
Larval trachea289 364 of 4 1.40Up
Larval carcass298 164 of 4 1.44Up
S2 cells (growing)581 74 of 4 2.81Up
Whole fly207 124 of 4

Looking for FBgn0029878. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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