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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029879 through 18771 annotations produced 1 hits

Anaphase Promoting Complex 7 (Apc7):

Annotation Number : CG14444
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029879
Gbrowse : chrX:6491077-6493733 (+) // 100.0 //
Probeset : 1631407_a_at
Accessions : protein= NP_572329; /// NP_727101;, nucleotide= NM_132101; /// NM_167079;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0029879.
BDGP gene expression has embryonic in situ data for CG14444: 4 pix of staining in 1 body parts.
BioGrid reports that CG14444 interacts with CG9986 .
TRiP has 1 RNAi stocks for FBgn0029879 available for purchase.
VDRC has 3 RNAi stocks for FBgn0029879 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 11 of 4 0.10Down
Head12 11 of 4 0.20Down
Eye8 10 of 4 0.11Down
Thoracicoabdominal ganglion8 00 of 4 0.10Down
Salivary gland27 51 of 4 0.35Down
Crop17 32 of 4 0.20Down
Midgut9 20 of 4 0.10Down
Tubule28 102 of 4 0.40Down
Hindgut25 24 of 4 0.30Down
Heart20 14 of 4 0.26Down
Fat body12 41 of 4 0.16Down
Ovary131 64 of 4 1.70Up
Testis5 11 of 4 0.10Down
Male accessory glands7 10 of 4 0.10Down
Virgin spermatheca13 31 of 4 0.17Down
Mated spermatheca8 01 of 4 0.11Down
Adult carcass17 31 of 4 0.20Down
Larval CNS5 12 of 4 0.07Down
Larval Salivary gland5 10 of 4 0.07Down
Larval midgut5 10 of 4 0.07Down
Larval tubule8 00 of 4 0.10Down
Larval hindgut7 01 of 4 0.10Down
Larval fat body5 10 of 4 0.10Down
Larval trachea5 30 of 4 0.07Down
Larval carcass10 22 of 4 0.14Down
S2 cells (growing)24 14 of 4 0.31Down
Whole fly79 74 of 4

Looking for FBgn0029879. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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