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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029881 through 18771 annotations produced 1 hits



pickled eggs (pigs):

Annotation Number : CG3973
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029881
Gbrowse : chrX:6494097-6546131 (+) // 100.0 //
Probeset : 1626090_at
Accessions : protein= NP_572331;, nucleotide= NM_132103;
Pathway : 0005881 // cytoplasmic microtubule // inferred from direct assay /// 0015629 // actin cytoskeleton // inferred from dire
Interpro : "0016787 // hydrolase activity // inferred from electronic annotation /// 0042624 // ATPase activity
FlyMine data for FBgn0029881.
BDGP gene expression has embryonic in situ data for CG3973: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0029881 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain267 74 of 4 5.10Up
Head116 144 of 4 2.20Up
Eye204 154 of 4 3.93Up
Thoracicoabdominal ganglion260 54 of 4 5.00Up
Salivary gland28 42 of 4 0.54Down
Crop89 84 of 4 1.70Up
Midgut132 14 of 4 2.50Up
Tubule13 13 of 4 0.30Down
Hindgut103 64 of 4 2.00Up
Heart181 214 of 4 3.49Up
Fat body156 214 of 4 3.01Up
Ovary14 14 of 4 0.30Down
Testis45 24 of 4 0.90None
Male accessory glands199 104 of 4 3.80Up
Virgin spermatheca92 134 of 4 1.78None
Mated spermatheca128 44 of 4 2.46Up
Adult carcass88 24 of 4 1.70Up
Larval CNS88 64 of 4 1.69Up
Larval Salivary gland66 144 of 4 1.27None
Larval midgut102 04 of 4 1.96Up
Larval tubule9 04 of 4 0.20Down
Larval hindgut185 134 of 4 3.56Up
Larval fat body22 14 of 4 0.40Down
Larval trachea62 144 of 4 1.20None
Larval carcass74 24 of 4 1.42Up
S2 cells (growing)302 134 of 4 5.81Up
Whole fly52 24 of 4

Looking for FBgn0029881. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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