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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029887 through 18771 annotations produced 1 hits



(CG3198):

Annotation Number : CG3198
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029887
Gbrowse : chrX:6565229-6568002 (-) // 100.0 //
Probeset : 1625927_at
Accessions : protein= NP_572337;, nucleotide= NM_132109;
Pathway : via spliceosome // inferred from sequence or structural similarity"
Interpro : 0005685 // U1 snRNP // inferred from sequence or structural similarity
FlyMine data for FBgn0029887.
BDGP gene expression has embryonic in situ data for CG3198: 17 pix of staining in 14 body parts.
BioGrid reports that CG3198 interacts with CG3198 CG9134 CG8942 .
VDRC has 1 RNAi stocks for FBgn0029887 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 ± 34 of 4 2.40Up
Head36 ± 34 of 4 1.30None
Eye55 ± 54 of 4 1.96Up
Thoracicoabdominal ganglion69 ± 94 of 4 2.50Up
Salivary gland44 ± 73 of 4 1.59None
Crop24 ± 34 of 4 0.90None
Midgut27 ± 44 of 4 1.00None
Tubule16 ± 01 of 4 0.60Down
Hindgut28 ± 14 of 4 1.00None
Heart42 ± 14 of 4 1.50Up
Fat body35 ± 64 of 4 1.26None
Ovary26 ± 24 of 4 0.90None
Testis12 ± 14 of 4 0.50Down
Male accessory glands31 ± 24 of 4 1.10None
Virgin spermatheca29 ± 14 of 4 1.03None
Mated spermatheca36 ± 34 of 4 1.30None
Adult carcass44 ± 24 of 4 1.60Up
Larval CNS38 ± 14 of 4 1.35Up
Larval Salivary gland40 ± 44 of 4 1.44None
Larval midgut17 ± 14 of 4 0.63Down
Larval tubule71 ± 34 of 4 2.50Up
Larval hindgut12 ± 14 of 4 0.45Down
Larval fat body18 ± 22 of 4 0.70Down
Larval trachea36 ± 74 of 4 1.30None
Larval carcass19 ± 14 of 4 0.68Down
S2 cells (growing)25 ± 44 of 4 0.91None
Whole fly28 ± 24 of 4

Looking for FBgn0029887. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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