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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029888 through 18771 annotations produced 1 hits



NADH ubiquinone oxidoreductase ASHI (CG3192):

Annotation Number : CG3192
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029888
Gbrowse : chrX:6571293-6573151 (-) // 100.0 //
Probeset : 1630698_at
Accessions : protein= NP_001027048; /// NP_572338;, nucleotide= NM_001031877; /// NM_132110;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0006120 // mitochondrial electron transport
Interpro : NADH to ubiquinone // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electroni
FlyMine data for FBgn0029888.
VDRC has 2 RNAi stocks for FBgn0029888 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain993 ± 254 of 4 1.10Up
Head1141 ± 334 of 4 1.30Up
Eye1411 ± 634 of 4 1.60Up
Thoracicoabdominal ganglion1144 ± 234 of 4 1.30Up
Salivary gland1628 ± 334 of 4 1.85Up
Crop797 ± 254 of 4 0.90None
Midgut1092 ± 244 of 4 1.20Up
Tubule1236 ± 234 of 4 1.40Up
Hindgut1574 ± 274 of 4 1.80Up
Heart1235 ± 114 of 4 1.40Up
Fat body1432 ± 844 of 4 1.63Up
Ovary421 ± 114 of 4 0.50Down
Testis358 ± 114 of 4 0.40Down
Male accessory glands575 ± 114 of 4 0.70Down
Virgin spermatheca1658 ± 644 of 4 1.88Up
Mated spermatheca1424 ± 484 of 4 1.62Up
Adult carcass2219 ± 584 of 4 2.50Up
Larval CNS591 ± 424 of 4 0.67Down
Larval Salivary gland846 ± 234 of 4 0.96None
Larval midgut968 ± 494 of 4 1.10None
Larval tubule702 ± 504 of 4 0.80Down
Larval hindgut1005 ± 374 of 4 1.14None
Larval fat body412 ± 164 of 4 0.50Down
Larval trachea485 ± 224 of 4 0.55Down
Larval carcass888 ± 784 of 4 1.01None
S2 cells (growing)521 ± 74 of 4 0.59Down
Whole fly880 ± 364 of 4

Looking for FBgn0029888. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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