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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029890 through 18771 annotations produced 1 hits



(CG4095):

Annotation Number : CG4095
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029890
Gbrowse : chrX:6575787-6577669 (+) // 100.0 //
Probeset : 1637633_at
Accessions : protein= NP_727109;, nucleotide= NM_167082;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electr
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004333 // fumarate hydratase activity // infer
FlyMine data for FBgn0029890.
Homophila reports that CG4095 is a close match (0) to human gene FH (NP_000134), a gene associated with Fumarase deficiency, 606812 (3);Leiomyomatosis and renal cell cancer, 605839 (3);Multiple cutaneous and uterine leiomyomata, 150800 (3).
BioGrid reports that CG4095 interacts with CG5939 CG9523 CG5111 CG7966 .
VDRC has 4 RNAi stocks for FBgn0029890 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.20Down
Head2 00 of 4 0.10Down
Eye3 10 of 4 0.16Down
Thoracicoabdominal ganglion3 00 of 4 0.10Down
Salivary gland1 00 of 4 0.07Down
Crop1 00 of 4 0.10Down
Midgut2 00 of 4 0.10Down
Tubule5 00 of 4 0.20Down
Hindgut2 00 of 4 0.10Down
Heart8 20 of 4 0.37Down
Fat body14 30 of 4 0.62None
Ovary3 10 of 4 0.20Down
Testis492 64 of 421.50Up
Male accessory glands4 20 of 4 0.20Down
Virgin spermatheca9 30 of 4 0.42Down
Mated spermatheca3 10 of 4 0.17Down
Adult carcass4 10 of 4 0.20Down
Larval CNS3 20 of 4 0.16Down
Larval Salivary gland2 10 of 4 0.11Down
Larval midgut13 10 of 4 0.59Down
Larval tubule4 10 of 4 0.20Down
Larval hindgut6 10 of 4 0.28Down
Larval fat body35 231 of 4 1.50None
Larval trachea3 30 of 4 0.13Down
Larval carcass5 20 of 4 0.23Down
S2 cells (growing)1 00 of 4 0.08Down
Whole fly22 30 of 4

Looking for FBgn0029890. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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