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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029891 through 18771 annotations produced 1 hits



Pink1 (Pink1):

Annotation Number : CG4523
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029891
Gbrowse : chrX:6577880-6581047 (+) // 99.86 //
Probeset : 1639403_s_at
Accessions : protein= NP_001027049; /// NP_001027050; /// NP_001027051; /// NP_001027052; /// NP_001027053; /// NP_001027054; /// NP_572340; /// NP_727110;, nucleotide= NM_001031878; /// NM_001031879; /// NM_001031880; /// NM_001031881; /// NM_001031882; /// NM_001031883; /// NM_132112; /// NM_167083;
Pathway : 0016006 // Nebenkern // inferred from direct assay
Interpro : 0004672 // protein kinase activity // non-traceable author statement /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0029891.
BDGP gene expression has embryonic in situ data for CG4523: 4 pix of staining in 1 body parts.
Homophila reports that CG4523 is a close match (2e-66) to human gene PINK1;PARK6 (NP_115785), a gene associated with Parkinson disease 6, early onset, 605909 (3).
BioGrid reports that CG4523 interacts with CG8614 .
TRiP has 5 RNAi stocks for FBgn0029891 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029891 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain327 64 of 4 0.90None
Head469 184 of 4 1.40Up
Eye615 104 of 4 1.78Up
Thoracicoabdominal ganglion436 184 of 4 1.30Up
Salivary gland574 134 of 4 1.66Up
Crop609 374 of 4 1.80Up
Midgut286 124 of 4 0.80Down
Tubule515 244 of 4 1.50Up
Hindgut494 104 of 4 1.40Up
Heart362 164 of 4 1.05None
Fat body279 234 of 4 0.81Down
Ovary231 74 of 4 0.70Down
Testis257 54 of 4 0.70Down
Male accessory glands389 214 of 4 1.10None
Virgin spermatheca259 234 of 4 0.75Down
Mated spermatheca223 64 of 4 0.65Down
Adult carcass893 364 of 4 2.60Up
Larval CNS142 134 of 4 0.41Down
Larval Salivary gland207 94 of 4 0.60Down
Larval midgut315 174 of 4 0.91None
Larval tubule399 144 of 4 1.20Up
Larval hindgut363 314 of 4 1.05None
Larval fat body152 74 of 4 0.40Down
Larval trachea149 444 of 4 0.43Down
Larval carcass353 394 of 4 1.02None
S2 cells (growing)205 104 of 4 0.60Down
Whole fly345 124 of 4

Looking for FBgn0029891. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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