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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029894 through 18771 annotations produced 1 hits



(CG14440):

Annotation Number : CG14440
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029894
Gbrowse : chrX:6590735-6592536 (-) // 100.0 //
Probeset : 1636107_at
Accessions : protein= NP_572343;, nucleotide= NM_132115;
FlyMine data for FBgn0029894.
BDGP gene expression has embryonic in situ data for CG14440: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0029894 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain93 ± 24 of 4 4.40Up
Head23 ± 24 of 4 1.10None
Eye45 ± 64 of 4 2.18Up
Thoracicoabdominal ganglion47 ± 14 of 4 2.30Up
Salivary gland23 ± 31 of 4 1.13None
Crop25 ± 24 of 4 1.20None
Midgut15 ± 11 of 4 0.70None
Tubule18 ± 13 of 4 0.90Down
Hindgut18 ± 14 of 4 0.90None
Heart33 ± 24 of 4 1.62Up
Fat body18 ± 64 of 4 0.88None
Ovary48 ± 14 of 4 2.30Up
Testis2 ± 10 of 4 0.10Down
Male accessory glands24 ± 10 of 4 1.20None
Virgin spermatheca21 ± 14 of 4 1.01None
Mated spermatheca20 ± 04 of 4 0.99None
Adult carcass13 ± 31 of 4 0.60None
Larval CNS45 ± 84 of 4 2.18Up
Larval Salivary gland21 ± 11 of 4 1.03None
Larval midgut18 ± 02 of 4 0.88None
Larval tubule21 ± 04 of 4 1.00None
Larval hindgut21 ± 24 of 4 1.03None
Larval fat body19 ± 14 of 4 0.90None
Larval trachea60 ± 134 of 4 2.87Up
Larval carcass21 ± 32 of 4 1.05None
S2 cells (growing)26 ± 14 of 4 1.26None
Whole fly21 ± 34 of 4

Looking for FBgn0029894. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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