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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029896 through 18771 annotations produced 1 hits



(CG3168):

Annotation Number : CG3168
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029896
Gbrowse : chrX:6615584-6634019 (-) // 100.0 //
Probeset : 1641320_s_at
Accessions : protein= NP_572345; /// NP_727116; /// NP_727117;, nucleotide= NM_132117; /// NM_167085; /// NM_167086;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0003918 // DNA topoisomerase (ATP-hydrolyzing) activity // inferred from electronic annotation /// 0005215 // transporte
FlyMine data for FBgn0029896.
BDGP gene expression has embryonic in situ data for CG3168: 19 pix of staining in 6 body parts.
Homophila reports that CG3168 is a close match (6e-18) to human gene CDSP;OCTN2;SCD;SLC22A5 (NP_003051), a gene associated with Carnitine deficiency, systemic primary, 212140 (3).
TRiP has 1 RNAi stocks for FBgn0029896 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029896 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain892 444 of 4 1.20None
Head466 254 of 4 0.60Down
Eye291 54 of 4 0.40Down
Thoracicoabdominal ganglion823 234 of 4 1.10None
Salivary gland39 33 of 4 0.05Down
Crop119 54 of 4 0.20Down
Midgut25 23 of 4 0.00Down
Tubule7340 1694 of 410.00Up
Hindgut548 24 of 4 0.70Down
Heart454 374 of 4 0.62Down
Fat body134 404 of 4 0.18Down
Ovary77 74 of 4 0.10Down
Testis23 14 of 4 0.00Down
Male accessory glands49 24 of 4 0.10Down
Virgin spermatheca105 174 of 4 0.14Down
Mated spermatheca65 84 of 4 0.09Down
Adult carcass253 174 of 4 0.30Down
Larval CNS582 514 of 4 0.79Down
Larval Salivary gland762 454 of 4 1.04None
Larval midgut86 94 of 4 0.12Down
Larval tubule5432 564 of 4 7.40Up
Larval hindgut318 44 of 4 0.43Down
Larval fat body883 1184 of 4 1.20None
Larval trachea79 144 of 4 0.11Down
Larval carcass262 564 of 4 0.36Down
S2 cells (growing)465 184 of 4 0.63Down
Whole fly734 454 of 4

Looking for FBgn0029896. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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