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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029897 through 18771 annotations produced 1 hits



Ribosomal protein L17 (RpL17):

Annotation Number : CG3203
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029897
Gbrowse : chrX:6635569-6638290 (-) // 100.0 //
Probeset : 1628028_s_at
Accessions : protein= NP_572346; /// NP_727118; /// NP_727119; /// NP_727120;, nucleotide= NM_132118; /// NM_167087; /// NM_167088; /// NM_167089;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0029897.
BDGP gene expression has embryonic in situ data for CG3203: 4 pix of staining in 1 body parts.
BioGrid reports that CG3203 interacts with CG33017 CG3780 CG4730 CG5494 CG5576 CG6542 CG6667 CG7196 CG8667 CG9117 CG9173 CG9986 .
VDRC has 3 RNAi stocks for FBgn0029897 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2103 714 of 4 0.70Down
Head3226 1574 of 4 1.10None
Eye4058 1274 of 4 1.43Up
Thoracicoabdominal ganglion2918 994 of 4 1.00None
Salivary gland4681 2234 of 4 1.65Up
Crop4023 1264 of 4 1.40Up
Midgut3686 704 of 4 1.30Up
Tubule3494 1204 of 4 1.20Up
Hindgut3625 924 of 4 1.30Up
Heart4601 3144 of 4 1.62Up
Fat body4024 5324 of 4 1.42Up
Ovary2488 574 of 4 0.90None
Testis397 194 of 4 0.10Down
Male accessory glands6386 2704 of 4 2.30Up
Virgin spermatheca3971 2124 of 4 1.40Up
Mated spermatheca4159 1334 of 4 1.47Up
Adult carcass3835 1284 of 4 1.40Up
Larval CNS2000 1514 of 4 0.71Down
Larval Salivary gland5368 2944 of 4 1.89Up
Larval midgut2762 1034 of 4 0.98None
Larval tubule2942 954 of 4 1.00None
Larval hindgut2999 444 of 4 1.06None
Larval fat body4067 4754 of 4 1.40None
Larval trachea4758 2554 of 4 1.68Up
Larval carcass3550 2984 of 4 1.25None
S2 cells (growing)3660 1414 of 4 1.29Up
Whole fly2833 1854 of 4

Looking for FBgn0029897. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime