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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029903 through 18771 annotations produced 1 hits



POD-1/coronin (pod1):

Annotation Number : CG4532
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029903
Gbrowse : chrX:6697719-6707554 (+) // 100.0 //
Probeset : 1641620_s_at
Accessions : protein= NP_001096897; /// NP_572352; /// NP_727125; /// NP_727126; /// NP_727127; /// NP_727128;, nucleotide= NM_001103427; /// NM_132124; /// NM_167091; /// NM_167092; /// NM_167093; /// NM_167094;
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity
FlyMine data for FBgn0029903.
BDGP gene expression has embryonic in situ data for CG4532: 34 pix of staining in 21 body parts.
BioGrid reports that CG4532 interacts with CG4795 .
TRiP has 2 RNAi stocks for FBgn0029903 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029903 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain318 84 of 4 4.40Up
Head118 54 of 4 1.60Up
Eye203 174 of 4 2.83Up
Thoracicoabdominal ganglion218 94 of 4 3.00Up
Salivary gland123 84 of 4 1.71Up
Crop143 44 of 4 2.00Up
Midgut109 84 of 4 1.50Up
Tubule43 14 of 4 0.60Down
Hindgut94 54 of 4 1.30Up
Heart122 54 of 4 1.70Up
Fat body92 94 of 4 1.28Up
Ovary172 14 of 4 2.40Up
Testis40 24 of 4 0.60Down
Male accessory glands208 114 of 4 2.90Up
Virgin spermatheca81 34 of 4 1.13None
Mated spermatheca79 74 of 4 1.11None
Adult carcass65 24 of 4 0.90None
Larval CNS975 794 of 413.56Up
Larval Salivary gland260 214 of 4 3.61Up
Larval midgut312 184 of 4 4.34Up
Larval tubule128 54 of 4 1.80Up
Larval hindgut228 104 of 4 3.17Up
Larval fat body209 154 of 4 2.90Up
Larval trachea330 134 of 4 4.60Up
Larval carcass176 204 of 4 2.45Up
S2 cells (growing)611 54 of 4 8.50Up
Whole fly72 34 of 4

Looking for FBgn0029903. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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