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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029909 through 18771 annotations produced 1 hits



(CG12796):

Annotation Number : CG12796
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029909
Gbrowse : chrX:6725508-6726694 (-) // 100.0 //
Probeset : 1641271_at
Accessions : protein= NP_572358;, nucleotide= NM_132130;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0029909.
BDGP gene expression has embryonic in situ data for CG12796: 4 pix of staining in 1 body parts.
Homophila reports that CG12796 is a close match (4e-11) to human gene GHSR (NP_940799), a gene associated with Short stature, 604271 (3).
BioGrid reports that CG12796 interacts with CG9327 .
TRiP has 1 RNAi stocks for FBgn0029909 available for purchase.
VDRC has 2 RNAi stocks for FBgn0029909 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 1.90None
Head3 10 of 4 2.60None
Eye3 00 of 4 2.91Up
Thoracicoabdominal ganglion1 00 of 4 1.60None
Salivary gland2 00 of 4 1.77None
Crop2 10 of 4 2.10None
Midgut12 00 of 410.80Up
Tubule6 10 of 4 5.80Up
Hindgut2 00 of 4 1.90None
Heart3 10 of 4 2.74None
Fat body2 10 of 4 1.79None
Ovary1 00 of 4 1.10None
Testis0 00 of 4 0.40None
Male accessory glands3 10 of 4 2.90None
Virgin spermatheca1 00 of 4 1.43None
Mated spermatheca1 00 of 4 1.26None
Adult carcass2 00 of 4 1.70None
Larval CNS1 00 of 4 1.36None
Larval Salivary gland0 00 of 4 0.79None
Larval midgut3 10 of 4 2.79None
Larval tubule3 10 of 4 3.10None
Larval hindgut1 00 of 4 1.40None
Larval fat body7 10 of 4 6.60Up
Larval trachea3 20 of 4 3.23None
Larval carcass6 10 of 4 5.23None
S2 cells (growing)2 10 of 4 2.43None
Whole fly1 00 of 4

Looking for FBgn0029909. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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