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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029911 through 18771 annotations produced 1 hits



(CG14435):

Annotation Number : CG14435
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029911
Gbrowse : chrX:6735497-6737697 (-) // 100.0 //
Probeset : 1627565_at
Accessions : protein= NP_001162682; /// NP_572359;, nucleotide= NM_001169211; /// NM_132131;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0029911.
VDRC has 2 RNAi stocks for FBgn0029911 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain59 24 of 4 1.70Up
Head34 24 of 4 1.00None
Eye22 04 of 4 0.66None
Thoracicoabdominal ganglion62 64 of 4 1.80Up
Salivary gland39 81 of 4 1.14None
Crop47 42 of 4 1.40None
Midgut57 44 of 4 1.70Up
Tubule20 10 of 4 0.60Down
Hindgut41 24 of 4 1.20None
Heart40 54 of 4 1.18None
Fat body48 163 of 4 1.42None
Ovary49 34 of 4 1.40Up
Testis24 33 of 4 0.70None
Male accessory glands22 50 of 4 0.70None
Virgin spermatheca14 30 of 4 0.42Down
Mated spermatheca13 40 of 4 0.40Down
Adult carcass39 81 of 4 1.20None
Larval CNS33 61 of 4 0.97None
Larval Salivary gland26 30 of 4 0.78None
Larval midgut46 42 of 4 1.34None
Larval tubule119 24 of 4 3.50Up
Larval hindgut36 24 of 4 1.05None
Larval fat body54 73 of 4 1.60None
Larval trachea25 43 of 4 0.75None
Larval carcass18 70 of 4 0.53None
S2 cells (growing)88 44 of 4 2.57Up
Whole fly34 43 of 4

Looking for FBgn0029911. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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