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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029912 through 18771 annotations produced 1 hits



(CG4557):

Annotation Number : CG4557
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029912
Gbrowse : chrX:6738375-6741708 (+) // 100.0 //
Probeset : 1625546_at
Accessions : protein= NP_572360;, nucleotide= NM_132132;
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0029912.
BioGrid reports that CG4557 interacts with CG6601 .
VDRC has 2 RNAi stocks for FBgn0029912 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 ± 54 of 4 1.90Up
Head17 ± 10 of 4 0.90None
Eye35 ± 44 of 4 1.78Up
Thoracicoabdominal ganglion44 ± 12 of 4 2.20Up
Salivary gland49 ± 70 of 4 2.46Up
Crop25 ± 10 of 4 1.30Up
Midgut5 ± 10 of 4 0.30Down
Tubule11 ± 20 of 4 0.60Down
Hindgut18 ± 20 of 4 0.90None
Heart18 ± 12 of 4 0.92None
Fat body11 ± 50 of 4 0.59Down
Ovary19 ± 12 of 4 1.00None
Testis15 ± 11 of 4 0.80None
Male accessory glands37 ± 20 of 4 1.90Up
Virgin spermatheca5 ± 10 of 4 0.27Down
Mated spermatheca8 ± 10 of 4 0.42Down
Adult carcass17 ± 20 of 4 0.90None
Larval CNS17 ± 10 of 4 0.86None
Larval Salivary gland48 ± 42 of 4 2.41Up
Larval midgut19 ± 10 of 4 0.99None
Larval tubule19 ± 30 of 4 1.00None
Larval hindgut18 ± 10 of 4 0.93None
Larval fat body2 ± 00 of 4 0.10Down
Larval trachea21 ± 60 of 4 1.09None
Larval carcass9 ± 20 of 4 0.46Down
S2 cells (growing)35 ± 22 of 4 1.77Up
Whole fly20 ± 10 of 4

Looking for FBgn0029912. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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