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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0029914 through 18771 annotations produced 1 hits


Annotation Number : CG4558
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029914
Gbrowse : chrX:6743804-6745923 (+) // 100.0 //
Probeset : 1639795_at
Accessions : protein= NP_001162683; /// NP_572362;, nucleotide= NM_001169212; /// NM_132134;
FlyMine data for FBgn0029914.
BDGP gene expression has embryonic in situ data for CG4558: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0029914 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain161 74 of 4 1.60Up
Head86 34 of 4 0.90Down
Eye110 44 of 4 1.11None
Thoracicoabdominal ganglion138 24 of 4 1.40Up
Salivary gland115 94 of 4 1.17None
Crop80 14 of 4 0.80Down
Midgut119 04 of 4 1.20Up
Tubule111 54 of 4 1.10Up
Hindgut73 34 of 4 0.70Down
Heart96 24 of 4 0.97None
Fat body102 74 of 4 1.03None
Ovary210 64 of 4 2.10Up
Testis15 24 of 4 0.20Down
Male accessory glands108 44 of 4 1.10None
Virgin spermatheca134 74 of 4 1.35Up
Mated spermatheca130 114 of 4 1.31None
Adult carcass71 34 of 4 0.70Down
Larval CNS147 94 of 4 1.48Up
Larval Salivary gland151 24 of 4 1.53Up
Larval midgut185 124 of 4 1.87Up
Larval tubule248 204 of 4 2.50Up
Larval hindgut121 154 of 4 1.22None
Larval fat body176 134 of 4 1.80Up
Larval trachea134 124 of 4 1.35Up
Larval carcass119 134 of 4 1.20None
S2 cells (growing)96 74 of 4 0.97None
Whole fly99 34 of 4

Looking for FBgn0029914. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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