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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029915 through 18771 annotations produced 1 hits



(CG14434):

Annotation Number : CG14434
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029915
Gbrowse : chrX:6745941-6746656 (-) // 100.0 //
Probeset : 1631048_at
Accessions : protein= NP_572363;, nucleotide= NM_132135;
Pathway : 0031533 // mRNA cap methyltransferase complex // inferred from electronic annotation
Interpro : 0004016 // adenylate cyclase activity // inferred from electronic annotation /// 0004651 // polynucleotide 5'-phosphatas
FlyMine data for FBgn0029915.
BioGrid reports that CG14434 interacts with CG14820 .
VDRC has 3 RNAi stocks for FBgn0029915 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 ± 14 of 4 0.20Down
Head39 ± 04 of 4 0.20Down
Eye27 ± 34 of 4 0.12Down
Thoracicoabdominal ganglion61 ± 34 of 4 0.30Down
Salivary gland47 ± 54 of 4 0.21Down
Crop31 ± 34 of 4 0.10Down
Midgut69 ± 14 of 4 0.30Down
Tubule44 ± 63 of 4 0.20Down
Hindgut37 ± 14 of 4 0.20Down
Heart40 ± 24 of 4 0.18Down
Fat body44 ± 84 of 4 0.19Down
Ovary407 ± 134 of 4 1.80Up
Testis29 ± 14 of 4 0.10Down
Male accessory glands159 ± 84 of 4 0.70Down
Virgin spermatheca58 ± 24 of 4 0.25Down
Mated spermatheca72 ± 54 of 4 0.32Down
Adult carcass34 ± 33 of 4 0.20Down
Larval CNS468 ± 184 of 4 2.05Up
Larval Salivary gland206 ± 74 of 4 0.90None
Larval midgut53 ± 04 of 4 0.23Down
Larval tubule53 ± 34 of 4 0.20Down
Larval hindgut75 ± 64 of 4 0.33Down
Larval fat body66 ± 84 of 4 0.30Down
Larval trachea276 ± 134 of 4 1.21None
Larval carcass140 ± 94 of 4 0.61Down
S2 cells (growing)244 ± 64 of 4 1.07None
Whole fly228 ± 164 of 4

Looking for FBgn0029915. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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