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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0029922 through 18771 annotations produced 2 hits



():

Annotation Number : CG14432
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chrX:6811676-6812358 (+) // 100.0 //
Probeset : 1638628_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 14 of 4 1.90None
Head1 ± 00 of 4 0.30Down
Eye0 ± 00 of 4 0.15Down
Thoracicoabdominal ganglion4 ± 20 of 4 0.80None
Salivary gland5 ± 30 of 4 0.86None
Crop3 ± 21 of 4 0.70None
Midgut4 ± 10 of 4 0.80None
Tubule4 ± 00 of 4 0.70Down
Hindgut1 ± 00 of 4 0.30Down
Heart2 ± 10 of 4 0.46None
Fat body5 ± 10 of 4 0.89None
Ovary4 ± 00 of 4 0.70None
Testis1 ± 00 of 4 0.30Down
Male accessory glands13 ± 20 of 4 2.20Up
Virgin spermatheca3 ± 10 of 4 0.63None
Mated spermatheca2 ± 00 of 4 0.36None
Adult carcass7 ± 30 of 4 1.30None
Larval CNS6 ± 22 of 4 1.08None
Larval Salivary gland8 ± 20 of 4 1.46None
Larval midgut5 ± 10 of 4 0.97None
Larval tubule4 ± 10 of 4 0.80None
Larval hindgut4 ± 10 of 4 0.77None
Larval fat body4 ± 00 of 4 0.70None
Larval trachea4 ± 30 of 4 0.70None
Larval carcass4 ± 00 of 4 0.82None
S2 cells (growing)5 ± 10 of 4 0.95None
Whole fly6 ± 10 of 4



(CG14431):

Annotation Number : CG14431
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029922
Gbrowse : chrX:6856178-6859825 (+) // 100.0 //
Probeset : 1623562_at
Accessions : protein= NP_572369;, nucleotide= NM_132141;
Interpro : 0031177 // phosphopantetheine binding // inferred from electronic annotation
FlyMine data for FBgn0029922.
VDRC has 1 RNAi stocks for FBgn0029922 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 ± 14 of 413.50Up
Head7 ± 00 of 4 4.30Up
Eye2 ± 10 of 4 1.15None
Thoracicoabdominal ganglion17 ± 50 of 4 9.60None
Salivary gland9 ± 40 of 4 5.24None
Crop1 ± 00 of 4 0.60None
Midgut1 ± 00 of 4 1.00None
Tubule5 ± 00 of 4 3.00Up
Hindgut4 ± 10 of 4 2.40None
Heart3 ± 10 of 4 2.01None
Fat body8 ± 30 of 4 4.75Up
Ovary1 ± 00 of 4 0.90None
Testis2 ± 00 of 4 1.50None
Male accessory glands9 ± 40 of 4 5.40None
Virgin spermatheca9 ± 20 of 4 5.21Up
Mated spermatheca5 ± 10 of 4 3.25Up
Adult carcass2 ± 10 of 4 1.50None
Larval CNS4 ± 30 of 4 2.79None
Larval Salivary gland6 ± 30 of 4 3.52None
Larval midgut7 ± 20 of 4 4.18None
Larval tubule3 ± 10 of 4 2.00None
Larval hindgut2 ± 00 of 4 1.15None
Larval fat body15 ± 10 of 4 8.70Up
Larval trachea2 ± 20 of 4 1.30None
Larval carcass8 ± 10 of 4 4.82Up
S2 cells (growing)2 ± 00 of 4 1.31None
Whole fly1 ± 00 of 4

Looking for FBgn0029922. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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